View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19216_high_21 (Length: 313)

Name: NF19216_high_21
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19216_high_21
NF19216_high_21
[»] chr2 (15 HSPs)
chr2 (19-313)||(36306784-36307078)
chr2 (42-232)||(42650168-42650361)
chr2 (20-237)||(4007176-4007393)
chr2 (30-230)||(43987831-43988037)
chr2 (13-112)||(10918576-10918675)
chr2 (39-168)||(14716536-14716665)
chr2 (156-235)||(3551526-3551605)
chr2 (30-96)||(21234450-21234516)
chr2 (77-206)||(32631069-32631201)
chr2 (62-134)||(43717322-43717394)
chr2 (51-134)||(21234529-21234612)
chr2 (33-102)||(36937196-36937265)
chr2 (61-212)||(42871365-42871512)
chr2 (39-125)||(22882780-22882866)
chr2 (30-75)||(411781-411826)
[»] chr4 (16 HSPs)
chr4 (19-234)||(47514178-47514396)
chr4 (13-207)||(29779020-29779217)
chr4 (13-212)||(17898094-17898296)
chr4 (31-237)||(11302288-11302498)
chr4 (9-112)||(7206302-7206405)
chr4 (13-150)||(32817423-32817556)
chr4 (41-207)||(8849519-8849687)
chr4 (49-232)||(46382669-46382854)
chr4 (14-154)||(46508004-46508142)
chr4 (121-212)||(38716785-38716879)
chr4 (38-96)||(47733592-47733650)
chr4 (38-112)||(42182898-42182972)
chr4 (42-94)||(41058958-41059011)
chr4 (49-106)||(48575411-48575468)
chr4 (44-96)||(2256402-2256454)
chr4 (41-77)||(53796392-53796428)
[»] chr3 (14 HSPs)
chr3 (20-235)||(32111888-32112106)
chr3 (79-237)||(49829088-49829249)
chr3 (30-134)||(40339224-40339328)
chr3 (79-171)||(41115394-41115489)
chr3 (40-152)||(51167846-51167958)
chr3 (30-102)||(25129522-25129594)
chr3 (41-95)||(32245255-32245309)
chr3 (40-115)||(51151563-51151638)
chr3 (167-237)||(12011883-12011953)
chr3 (156-232)||(25129633-25129710)
chr3 (156-232)||(46870315-46870391)
chr3 (82-134)||(25579167-25579219)
chr3 (30-112)||(54784333-54784415)
chr3 (30-106)||(44489399-44489475)
[»] chr7 (10 HSPs)
chr7 (32-237)||(26984466-26984673)
chr7 (38-235)||(38453262-38453444)
chr7 (30-152)||(35105138-35105260)
chr7 (41-171)||(7168863-7168996)
chr7 (31-132)||(41792360-41792461)
chr7 (38-102)||(22915800-22915864)
chr7 (50-118)||(48290410-48290478)
chr7 (57-155)||(30139004-30139102)
chr7 (38-76)||(38733802-38733840)
chr7 (41-74)||(35812369-35812402)
[»] chr8 (10 HSPs)
chr8 (33-207)||(24183670-24183847)
chr8 (13-237)||(38516141-38516369)
chr8 (81-155)||(42624919-42624993)
chr8 (42-112)||(24776360-24776430)
chr8 (42-87)||(28534839-28534884)
chr8 (127-209)||(24098199-24098284)
chr8 (58-132)||(38131564-38131637)
chr8 (14-75)||(4344828-4344889)
chr8 (53-111)||(15810532-15810590)
chr8 (124-207)||(24774828-24774914)
[»] chr1 (5 HSPs)
chr1 (69-237)||(30220232-30220403)
chr1 (30-134)||(3887431-3887536)
chr1 (58-96)||(41521705-41521743)
chr1 (13-83)||(47978400-47978470)
chr1 (49-140)||(15515071-15515163)
[»] chr5 (11 HSPs)
chr5 (30-236)||(32421915-32422133)
chr5 (30-155)||(6095314-6095439)
chr5 (42-197)||(1879089-1879247)
chr5 (30-134)||(23647622-23647726)
chr5 (30-134)||(23810847-23810951)
chr5 (38-130)||(5970011-5970103)
chr5 (38-190)||(5465461-5465615)
chr5 (30-131)||(19563802-19563903)
chr5 (31-140)||(41606243-41606352)
chr5 (38-105)||(16572956-16573023)
chr5 (38-170)||(6988081-6988214)
[»] chr6 (8 HSPs)
chr6 (78-237)||(1872255-1872417)
chr6 (30-140)||(34800798-34800907)
chr6 (55-96)||(16441981-16442022)
chr6 (49-154)||(34805261-34805366)
chr6 (49-147)||(578915-579013)
chr6 (42-113)||(12104180-12104251)
chr6 (49-133)||(16243598-16243682)
chr6 (103-207)||(24803913-24804023)
[»] scaffold0009 (1 HSPs)
scaffold0009 (49-146)||(207066-207163)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 36307078 - 36306784
Alignment:
Q  19 taaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagct 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36307078 taaagtaattgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaggctaaaatcaattgtagaagacaaaagctataaattgtagct 36306979  T
Q  119 ccaagtagaatcaattgtacaatcaaaatcaattctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  36306978 ccaagtagaatcaattgtacaatcaaaatcaattctataaatcatccaaacatcgtaaaatcaattccacaatctctagaatcacttttaaccctctaga 36306879  T
Q  219 attgaaaccaaacacatgccgaaatagttgttgtgggccaagggagtttgatctaacccgtaagtagatgacttatatccatcaaagtcgtgagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36306878 attgaaaccaaacacatgccgaaatagttgttgtgggccaagggagtttgatctaacccgtaagtagatgacttatatccatcaaagtcgtgagt 36306784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 42650361 - 42650168
Alignment:
Q  42 atttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaat 141  Q
    |||||| ||||||| |||||| |||| ||| ||| |||||||||||||| ||||||||||||||| ||||| || || ||||||||||||||  |||||     
T  42650361 atttatgtaaaagttgatttagcaattaatctaaggctaaaatcaattggagaagacaaaagctacaaattataacttcaagtagaatcaatcctacaaa 42650262  T
Q  142 caaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaaca 232  Q
    | ||||||||| ||   |||||||||||||||||||||||||||||| |||||||||||||||||||||  || || |||||||||||||||||    
T  42650261 cgaaatcaattatactttaaatcatccaaacatcataaaatcaattctacaatctctagaatcacttttggcctaccagaattgaaaccaaaca 42650168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 4007176 - 4007393
Alignment:
Q  20 aaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctc 119  Q
    ||||||||  ||||||| |||||||||| |||||||||||||| |||| ||||||| |||||||||||||| ||||| ||||| ||| |||||||| ||     
T  4007176 aaagtaatttatgtttg-atgtatttatgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgcagaaggcaaaaactacaaattgtaactt 4007274  T
Q  120 caagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccacta 216  Q
     |||||||||||||| ||    |||||| |||||||   |||||| | |||||| ||| |||||||||| ||||  |||||||||| ||||  | | |||    
T  4007275 aaagtagaatcaattctaagggcaaaatgaattctactttaaatctttcaaacaacat-aaatcaattctacaacatctagaatca-tttttgctctcta 4007372  T
Q  217 gaattgaaaccaaacacatgc 237  Q
    |||| ||||||||||||||||    
T  4007373 gaatcgaaaccaaacacatgc 4007393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 43988037 - 43987831
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagc--taaaatcaattgtagaagacaaaagctataaattgtagctccaagtaga 127  Q
    ||||||| ||||||||||  |||||| ||||| ||||||||||||  ||   |||||||| |||||||| ||||||||| ||| | |||||   | ||||    
T  43988037 atgtttgaatgtatttatgcaaaagttgatttgacaataaatttagggccaaaaaatcaagtgtagaagccaaaagctacaaactctagctttcattaga 43987938  T
Q  128 atcaattgtacaatcaaaatcaatt---ctataaatcatccaaacatcataaaatcaattccacaatctctagaatc-acttttaacccactagaattga 223  Q
    ||||||| | |||  ||||||||||    | |||||||||||||||| ||||||||||||| ||||  ||||||||| ||||| ||||| | | ||||||    
T  43987937 atcaattctgcaaagaaaatcaattatcttttaaatcatccaaacatgataaaatcaattctacaacttctagaatcaactttgaaccctccaaaattga 43987838  T
Q  224 aaccaaa 230  Q
    |||||||    
T  43987837 aaccaaa 43987831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 10918675 - 10918576
Alignment:
Q  13 tgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    ||||| |||||| ||  ||||||| |||||||| | ||||||||||||| ||||||||||||| ||||||| || ||||||||| ||||||||| |||||    
T  10918675 tgaatgtaaagtgatttatgtttggatgtatttgtgtaaaagtggatttgacaataaatttaaggctaaaaccatttgtagaagccaaaagctacaaatt 10918576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 14716665 - 14716536
Alignment:
Q  39 tgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtac 138  Q
    |||||||||  |||| || ||||||| |||| ||||| | |||||||||||| | |||  ||||| |||||||  || || ||||||||||||||| |||    
T  14716665 tgtatttatgcaaaaatgaatttaacgataattttaaggttaaaatcaattggaaaaggaaaaagttataaatcttaacttcaagtagaatcaattctac 14716566  T
Q  139 aatcaaaatcaattctataaatcatccaaa 168  Q
    || |||||||  |||| |||||||||||||    
T  14716565 aaacaaaatcggttctttaaatcatccaaa 14716536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 3551605 - 3551526
Alignment:
Q  156 taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaacacat 235  Q
    |||||||||||||||||||||||||||||  | ||  ||||||||||||||  | || ||| ||||||||||||||||||    
T  3551605 taaatcatccaaacatcataaaatcaattttataacttctagaatcactttagatcctctaaaattgaaaccaaacacat 3551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 21234450 - 21234516
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaag 96  Q
    ||||||| |||||||||| | ||||||||||| |||||||| |||| | ||||||||||||||||||    
T  21234450 atgtttggatgtatttatgtgaaagtggatttgacaataaacttaaggttaaaatcaattgtagaag 21234516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 32631069 - 32631201
Alignment:
Q  77 gctaaaatcaattgtagaagacaaaagct-ataaattgtagctccaagtagaatcaattgtacaatcaaaatca--attctataaatcatccaaacatca 173  Q
    |||||||||||||||||||| || ||  | ||||||| || ||  || || |||||| ||||||| |||||| |  ||||| ||||||||| ||||||      
T  32631069 gctaaaatcaattgtagaagtcagaaaatcataaattttaactttaactaaaatcaaatgtacaaacaaaataattattctttaaatcatctaaacatgg 32631168  T
Q  174 taaaatcaattccacaatctctagaatcacttt 206  Q
    |||||||||||| |||||||| |||||||||||    
T  32631169 taaaatcaattctacaatctcaagaatcacttt 32631201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 43717394 - 43717322
Alignment:
Q  62 aacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaatt 134  Q
    ||||||||||| || |||||||||||||||| |||  | |||||| ||||| ||||| |||||||||||||||    
T  43717394 aacaataaattcaatgctaaaatcaattgtaaaagcaagaagctacaaattctagcttcaagtagaatcaatt 43717322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 21234529 - 21234612
Alignment:
Q  51 aaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaatt 134  Q
    ||||| ||||| |||||||| ||||   || | ||||||||||||| ||||||||| ||||| ||||| |||||||||||||||    
T  21234529 aaagtcgatttgacaataaaattaagattacagtcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaatt 21234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 36937196 - 36937265
Alignment:
Q  33 tttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaa 102  Q
    ||||||| ||||||  |||||||  ||| ||||||||||| || |||||||||||||||||||| |||||    
T  36937196 tttgtatatatttaagtaaaagtatattgaacaataaattcaaggctaaaatcaattgtagaagtcaaaa 36937265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 42871512 - 42871365
Alignment:
Q  61 taacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaattctataaat 160  Q
    |||||||||||||||  | ||||||||||||||||   ||||  | |||||| |||||  |||||||||||||| || ||  |||||   |||  |||||    
T  42871512 taacaataaatttaagaccaaaatcaattgtagaaataaaaaattctaaattctagcttaaagtagaatcaattataaaag-aaaat---ttccttaaat 42871417  T
Q  161 catccaaacatcataaaatcaattccacaatctctagaatcacttttaaccc 212  Q
     ||| |||||| ||||||||||||| |||| |||||| | ||||||||||||    
T  42871416 tatcaaaacatgataaaatcaattctacaacctctagcaccacttttaaccc 42871365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 22882866 - 22882780
Alignment:
Q  39 tgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagta 125  Q
    ||||||||| | ||| ||||||||||||||| ||||| | || ||||||||| ||||  ||||| ||||||||| || || ||||||    
T  22882866 tgtatttatgttaaattggatttaacaataattttaaggttacaatcaattgaagaaagcaaaaactataaattctaacttcaagta 22882780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 411826 - 411781
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaa 75  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||||||    
T  411826 atgtttggatgtgtttatataaaagttgatttaacaatatatttaa 411781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 47514178 - 47514396
Alignment:
Q  19 taaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagct 118  Q
    |||||| ||| ||||||| |||| ||| ||||||||||||||||||||||||||||| |||| |||  |||||||||| |||||||||||||||||| ||    
T  47514178 taaagtgatctatgtttggatgtttttctataaaagtggatttaacaataaatttaaggctagaattcattgtagaaggcaaaagctataaattgtaact 47514277  T
Q  119 ccaagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccact 215  Q
     |||||| |||||||| |||||  |||||||||||||   ||||||||| |||||||||||||||||||| | || || || |||||||||| || | ||    
T  47514278 tcaagtaaaatcaattctacaagaaaaatcaattctactttaaatcatctaaacatcataaaatcaattctaaaacctatataatcacttttgactctct 47514377  T
Q  216 agaattgaaaccaaacaca 234  Q
    |||||||||| ||||||||    
T  47514378 agaattgaaatcaaacaca 47514396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 29779020 - 29779217
Alignment:
Q  13 tgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    |||||||||||| ||  || |||| |||||||| | ||||||||||||  ||||||| |||||  ||||||||||||| |||||  |||||||| |||||    
T  29779020 tgaatataaagtgatttatctttggatgtatttgtgtaaaagtggattcgacaataactttaagcctaaaatcaattgcagaagtgaaaagctacaaatt 29779119  T
Q  113 gtagctccaagtagaatcaattgtacaatcaaaatcaattc---tataaatcatccaaacatcataaaatcaattccacaatctctagaatcactttt 207  Q
     ||||| ||||||||||||||| ||||| ||||||||||||   | |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  29779120 ctagcttcaagtagaatcaattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctacaatctctagaatcactttt 29779217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 17898094 - 17898296
Alignment:
Q  13 tgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    ||||| |||||| ||  ||||||| || ||||||  |||||||| ||| |||||||| |  || || || |||||||||||||| ||||| ||||| |||    
T  17898094 tgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaacaataattccaaggcaaagatcaattgtagaagccaaaaactatatatt 17898193  T
Q  113 gtagctccaagtagaatcaattgtacaatcaaaatcaatt---ctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaa 209  Q
    || ||| ||||||||||||||| ||||| |||||||||||   || |||| ||||||||||| ||| ||||||||| |||| ||||||||||| |||| |    
T  17898194 gttgcttcaagtagaatcaattctacaagcaaaatcaattatactttaaaccatccaaacatgatacaatcaattctacaacctctagaatcaattttga 17898293  T
Q  210 ccc 212  Q
    |||    
T  17898294 ccc 17898296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 11302498 - 11302288
Alignment:
Q  31 tgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagct--ataaattgtagctccaagtagaa 128  Q
    |||||| |||||||| | |||||||| |||| || |||||||||| ||||||||||| |||||||| ||||||||  | ||||| ||||| |||||||||    
T  11302498 tgtttggatgtatttgtgtaaaagtgaatttgacgataaatttaatgctaaaatcaagtgtagaagccaaaagctacaaaaattctagcttcaagtagaa 11302399  T
Q  129 tcaattgtacaatcaaaatcaa---ttctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaa 225  Q
    ||||||  |||| ||||| |||   |||  |||||||||||||||| || |||||||||| ||||  |||||||||| |||| || | | | ||||||||    
T  11302398 tcaattccacaagcaaaaccaaatcttcattaaatcatccaaacatgat-aaatcaattctacaacttctagaatcaattttgactctccaaaattgaaa 11302300  T
Q  226 ccaaacacatgc 237  Q
    ||||||| ||||    
T  11302299 ccaaacatatgc 11302288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7206405 - 7206302
Alignment:
Q  9 gagatgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctata 108  Q
    ||||||||| |||||| ||  || |||| |||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||| |    
T  7206405 gagatgaatgtaaagtgatttatatttggatgtatttatgtaaaactagatttaacaataaatttaaggctaaaatcaattgtagaagccaaaagctaca 7206306  T
Q  109 aatt 112  Q
    ||||    
T  7206305 aatt 7206302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 32817423 - 32817556
Alignment:
Q  13 tgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    ||||| |||||| ||  ||||||| |||||||| | ||||||||||||| |    ||| |||| ||||||||||||||||||||  |||||||| |||||    
T  32817423 tgaatgtaaagtgatttatgtttggatgtatttgtgtaaaagtggatttca----aaaattaaggctaaaatcaattgtagaagtaaaaagctacaaatt 32817518  T
Q  113 gtagctccaagtagaatcaattgtacaatcaaaatcaa 150  Q
     ||||  ||||||||||||||| ||||| |||||||||    
T  32817519 ctagcctcaagtagaatcaattctacaaacaaaatcaa 32817556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 8849519 - 8849687
Alignment:
Q  41 tatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaa 140  Q
    ||||||| ||||| ||||||||||||||||||||| |  |||||||||||| |||| ||||||||||||||| |||||  |||||| || |||| |||||    
T  8849519 tatttatgtaaaaatggatttaacaataaatttaagggcaaaatcaattgtggaagccaaaagctataaattctagct-taagtaggattaattctacaa 8849617  T
Q  141 tcaaaatcaattc---tataaatcatccaaacatcataaaatcaattccacaatctctagaatcactttt 207  Q
      ||||| | |||   | ||||| ||||||| || || |||||||| | |||| ||| ||||||||||||    
T  8849618 ctaaaataatttcttatttaaattatccaaaaatgatgaaatcaatcctacaacctccagaatcactttt 8849687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 46382854 - 46382669
Alignment:
Q  49 taaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatc 148  Q
    |||||||| |||| |||||||||||||| ||||||| ||| ||||||| ||||| | | ||||| ||  |||| |||||||||||| ||||| |||||||    
T  46382854 taaaagtgaattttacaataaatttaaaactaaaattaatcgtagaagccaaaaacaacaaattctaaatccatgtagaatcaattttacaaacaaaatc 46382755  T
Q  149 aatt---ctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaaca 232  Q
    ||||   || |||||| || ||| || ||| | ||||||| |||| |||| |||||| |||| |||| | | ||||||||| |||||    
T  46382754 aattatcctttaaatcctctaaa-atgatatactcaattctacaacctcttgaatcaattttgaccctccaaaattgaaactaaaca 46382669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 46508004 - 46508142
Alignment:
Q  14 gaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattg 113  Q
    ||||||||||| ||  ||||||| | || ||| || |||||||| |||||||||||||||| | |||||||| |||||||||| ||||| | | |||||     
T  46508004 gaatataaagtgatttatgtttgaacgtgtttgtaaaaaagtgggtttaacaataaatttaga-ctaaaatc-attgtagaagccaaaatcaacaaattc 46508101  T
Q  114 tagctccaagtagaatcaattgtacaatcaaaatcaattct 154  Q
     |||| ||| ||||||||||| ||||| ||||| |||||||    
T  46508102 gagcttcaaatagaatcaattttacaaacaaaaccaattct 46508142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 38716879 - 38716785
Alignment:
Q  121 aagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaaccc 212  Q
    |||||||||||||| | ||| |||||| ||||||    |||||||| ||||| | ||||||||||||  ||||||||||||||||||||| ||||    
T  38716879 aagtagaatcaattatgcaagcaaaataaattctgctttaaatcattcaaacttgataaaatcaattttacaatctctagaatcacttttgaccc 38716785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 47733592 - 47733650
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaag 96  Q
    |||||||||| ||||| | ||||||| ||||||||||| ||||||||||||| ||||||    
T  47733592 atgtatttatgtaaaattagatttaataataaatttaaggctaaaatcaattatagaag 47733650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 42182972 - 42182898
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    |||||||||| | ||||||  ||||||||||||||||| | | ||||||| |||||| | ||||| |||||||||    
T  42182972 atgtatttatcttaaagtgagtttaacaataaatttaaggatcaaatcaactgtagaggccaaaatctataaatt 42182898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 41059011 - 41058958
Alignment:
Q  42 atttatataaaagtggatttaacaataaatttaaagctaaaa-tcaattgtaga 94  Q
    |||||||||||||||| || |||||| ||||||||| ||||| |||||||||||    
T  41059011 atttatataaaagtgggttgaacaatcaatttaaagttaaaagtcaattgtaga 41058958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 48575468 - 48575411
Alignment:
Q  49 taaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagcta 106  Q
    ||||| || |||||||||||||||| ||  ||||||||||||||||||  ||||||||    
T  48575468 taaaactgaatttaacaataaattttaaattaaaatcaattgtagaagttaaaagcta 48575411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 2256402 - 2256454
Alignment:
Q  44 ttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaag 96  Q
    |||| ||||| ||| ||||||||||||||||| |||||||| |||| ||||||    
T  2256402 ttatgtaaaaatggttttaacaataaatttaaggctaaaatgaattatagaag 2256454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 53796392 - 53796428
Alignment:
Q  41 tatttatataaaagtggatttaacaataaatttaaag 77  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  53796392 tatttatgtaaaaatggatttaacaataaatttaaag 53796428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 32112106 - 32111888
Alignment:
Q  20 aaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctc 119  Q
    ||||||||  ||||||| || ||||||| ||||||||||||||||||| |||||||  |||||||||||| || ||| ||||||||| |||||||||||     
T  32112106 aaagtaatttatgtttggatttatttatgtaaaagtggatttaacaatgaatttaagtctaaaatcaattctaaaagccaaaagctacaaattgtagctt 32112007  T
Q  120 caagtagaatcaattgtacaatcaaaatcaatt---ctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccacta 216  Q
    ||||||||||||||| ||||  |||||||||||   || |||||||||||| || |||||||||||||  | || ||| |||||||||||| | || |||    
T  32112006 caagtagaatcaattctacatacaaaatcaattttactttaaatcatccaaccaacataaaatcaattttagaacctcaagaatcacttttgatcctcta 32111907  T
Q  217 gaattgaaaccaaacacat 235  Q
    |||||||||||||||||||    
T  32111906 gaattgaaaccaaacacat 32111888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 49829088 - 49829249
Alignment:
Q  79 taaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcata 175  Q
    ||||||||||||||||||  || | ||| ||||||||||| ||||||||||||||||||||| ||||||  ||||||   ||||||||||||||||||||    
T  49829088 taaaatcaattgtagaagctaagaactacaaattgtagcttcaagtagaatcaattgtacaagcaaaattgattctactttaaatcatccaaacatcata 49829187  T
Q  176 aaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaacacatgc 237  Q
     ||||||||  |||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  49829188 taatcaattaaacaacctctagaatcacttttgaccctctagaattgaaaccaaacacatgc 49829249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 40339328 - 40339224
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| || ||||||  |||||||| ||| ||||||||||| || ||||||||||||||||||||  |||||||| ||||||||||| ||||||||||    
T  40339328 atgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggctaaaatcaattgtagaagcaaaaagctacaaattgtagcttcaagtagaat 40339229  T
Q  130 caatt 134  Q
    |||||    
T  40339228 caatt 40339224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 41115394 - 41115489
Alignment:
Q  79 taaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacat 171  Q
    |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||| ||||||||||||||   |||| |||||||||||    
T  41115394 taaaatcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctactttaaaacatccaaacat 41115489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 51167958 - 51167846
Alignment:
Q  40 gtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtaca 139  Q
    |||||||| |||||| ||||||  |||||||| ||| |||||||||||||||||||| ||||||||  |||||||||||  || ||||||||||| || |    
T  51167958 gtatttatgtaaaagcggatttcgcaataaatgtaaggctaaaatcaattgtagaagtcaaaagctgcaaattgtagcttaaactagaatcaattataaa 51167859  T
Q  140 atcaaaatcaatt 152  Q
    | |||||||||||    
T  51167858 aacaaaatcaatt 51167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 25129522 - 25129594
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaa 102  Q
    ||||||| |||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||| |||||    
T  25129522 atgtttggatgtatttatgtaaaagtggatttaacaataaattggaggctaaaatcaattatagaagccaaaa 25129594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 32245255 - 32245309
Alignment:
Q  41 tatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaa 95  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  32245255 tatttgtataaaagtggatttatcaataaatttaaaactaaaatcaattgtagaa 32245309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 51151638 - 51151563
Alignment:
Q  40 gtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgta 115  Q
    |||||||| |||||| ||||||  |||||||| ||| |||||||||||||||||||| ||||||||  ||||||||    
T  51151638 gtatttatgtaaaagcggatttcgcaataaatgtaaggctaaaatcaattgtagaagtcaaaagctgcaaattgta 51151563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 12011883 - 12011953
Alignment:
Q  167 aacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaacacatgc 237  Q
    ||||||||||||||||||  |||| ||||||||||| |||| |||| || | |||||||||||||||||||    
T  12011883 aacatcataaaatcaattatacaacctctagaatcattttttaccctctggtattgaaaccaaacacatgc 12011953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 25129633 - 25129710
Alignment:
Q  156 taaatcatccaaacatcataaaatcaattccacaatctctagaatcactttt-aacccactagaattgaaaccaaaca 232  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||| |||| | ||| | | |||||||||||||||    
T  25129633 taaatcatccaaacatgataaaatcaattctacaacctctagaatcaattttgacccctcgaaaattgaaaccaaaca 25129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 46870391 - 46870315
Alignment:
Q  156 taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaaca 232  Q
    |||||||||||||||| ||||||||||||| ||||  |||| |||||||||| |||| | | |||||||| ||||||    
T  46870391 taaatcatccaaacatgataaaatcaattctacaacatctataatcacttttgaccctccaaaattgaaatcaaaca 46870315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 25579167 - 25579219
Alignment:
Q  82 aatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaatt 134  Q
    ||||||||||| ||| ||||||||||||||| || || |||||||||||||||    
T  25579167 aatcaattgtaaaagtcaaaagctataaattataccttcaagtagaatcaatt 25579219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 54784415 - 54784333
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    ||||||| || ||||||| |||||||  ||| |||||||||||||||| ||||||  |||||| ||  |||||| ||||||||    
T  54784415 atgtttgaatatatttatgtaaaagtaaattaaacaataaatttaaagataaaatagattgtaaaaatcaaaagttataaatt 54784333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 44489399 - 44489475
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagcta 106  Q
    ||||||| || ||||||  |||||||| ||| |||||| |||| ||  ||||||||||||||||||  |||||||||    
T  44489399 atgtttggatatatttaggtaaaagtgaattgaacaatgaattcaagactaaaatcaattgtagaaaccaaaagcta 44489475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 26984466 - 26984673
Alignment:
Q  32 gtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatca 131  Q
    ||||| |||| |||| |||||||||||||||||||||||||||| | |||||| |||  || ||| |||| |||| ||||  ||||| ||||||||||||    
T  26984466 gtttgaatgtttttacataaaagtggatttaacaataaatttaagggtaaaattaatcataaaagccaaa-gctacaaatcttagcttcaagtagaatca 26984564  T
Q  132 attgtacaatcaaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaacca 228  Q
    ||| ||||| ||||||||| ||||   |||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||  || || |||||||||    
T  26984565 attctacaaacaaaatcaagtctactttaaatcattcaaacatcataaaatcaattctacaacctctagaatcacttttgaccatcttgatttgaaacca 26984664  T
Q  229 aacacatgc 237  Q
    || ||||||    
T  26984665 aatacatgc 26984673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 38453444 - 38453262
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgta 137  Q
    |||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||| |||||| || |||| | |||| ||||||||||||||| ||    
T  38453444 atgtatttatgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgtagaagtcaaaagttacaaatagcagcttcaagtagaatcaattcta 38453345  T
Q  138 caatcaaaatcaattctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaacacat 235  Q
                   || ||||||||||||| |||||||||||||||| |||| ||||||||| |||||| | || |||||||||||||||| |||||    
T  38453344 ---------------ctttaaatcatccaaatatcataaaatcaattctacaacctctagaattacttttgatcctctagaattgaaaccaagcacat 38453262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 35105260 - 35105138
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| |||| ||||| |||||||||||||| | || ||||||| |||||| ||||||||||||  ||||| ||| ||||| ||||| ||||||||||    
T  35105260 atgtttggatgtttttatgtaaaagtggatttatcgatgaatttaaggctaaagtcaattgtagaaaccaaaaactacaaattatagcttcaagtagaat 35105161  T
Q  130 caattgtacaatcaaaatcaatt 152  Q
    ||||| ||||| |||||||||||    
T  35105160 caattctacaagcaaaatcaatt 35105138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 7168996 - 7168863
Alignment:
Q  41 tatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaa 140  Q
    |||||| ||||||||| ||| || ||||||||||| | ||||||||||  ||||||  |||||||| ||||| |||||  | | |||||||||| ||| |    
T  7168996 tatttagataaaagtgaattgaataataaatttaatgataaaatcaatcatagaagtaaaaagctacaaattctagctttaggcagaatcaattctacta 7168897  T
Q  141 tcaaaatcaattcta---taaatcatccaaacat 171  Q
     ||||||||||||||   ||||||||||||||||    
T  7168896 gcaaaatcaattctaatttaaatcatccaaacat 7168863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 41792461 - 41792360
Alignment:
Q  31 tgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatc 130  Q
    |||||| ||| |||||  ||||| | ||||||||||||||||||||| |||||||||||||||||| ||||| ||| || || || || ||||| |||||    
T  41792461 tgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatc 41792362  T
Q  131 aa 132  Q
    ||    
T  41792361 aa 41792360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 22915800 - 22915864
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaa 102  Q
    |||||||||| |||||||| ||||| ||||||||| || | |||||||||||||||||| |||||    
T  22915800 atgtatttatgtaaaagtgaatttagcaataaattcaaggttaaaatcaattgtagaagtcaaaa 22915864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 48290478 - 48290410
Alignment:
Q  50 aaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagct 118  Q
    ||||||||||| || |||||||| || |||||||||||||||||||  ||||| ||| ||||| |||||    
T  48290478 aaaagtggattgaaaaataaattcaaggctaaaatcaattgtagaaatcaaaacctaaaaattctagct 48290410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 30139004 - 30139102
Alignment:
Q  57 gatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaattcta 155  Q
    |||| ||||||||||| || | |||||||||||||| |||  ||||| ||||| || || || ||| |||| ||||||||| ||  |||||||||||||    
T  30139004 gattgaacaataaattcaaggttaaaatcaattgtaaaagttaaaagttataatttttaacttcaaatagattcaattgtaaaagtaaaatcaattcta 30139102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 38733840 - 38733802
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaa 76  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  38733840 atgtatttatgtaaaagtggattaaacaataaatttaaa 38733802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 35812402 - 35812369
Alignment:
Q  41 tatttatataaaagtggatttaacaataaattta 74  Q
    ||||||||||||| ||||||||||||||||||||    
T  35812402 tatttatataaaaatggatttaacaataaattta 35812369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 24183847 - 24183670
Alignment:
Q  33 tttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaa 132  Q
    |||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||| || | | ||||| ||||||||| ||||| |||||||||||||    
T  24183847 tttgaatgtatatatgtaaaagtggatttatcaataaatttaaagctaaaatcaattatatatgccaaaaactataaattatagcttcaagtagaatcaa 24183748  T
Q  133 ttgtacaatcaaaatcaatt---ctataaatcatccaaacatcataaaatcaattccacaatctctagaatcactttt 207  Q
     |  |||||||||||||| |   ||| |||||||| ||||||||||| || ||||| |||||||||| ||||||||||    
T  24183747 atcaacaatcaaaatcaaatccactacaaatcatctaaacatcataacataaattctacaatctctaaaatcactttt 24183670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 38516369 - 38516141
Alignment:
Q  13 tgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    ||||| |||||| ||  ||||||| |||||||||| ||||| | | ||||||||| ||||||| ||||| ||| |||||||||   ||||  || |||||    
T  38516369 tgaatgtaaagtgatttatgtttggatgtatttatgtaaaaatagttttaacaatgaatttaaggctaagatcgattgtagaaataaaaaattagaaatt 38516270  T
Q  113 gtagctccaagtagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatca-ctttta 208  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||   ||| |||||||| |||| |||||||||||  |||  ||||| ||||| ||||||    
T  38516269 gtagcttcaagtagaatcaattctacaaacaaaatcaattctactttaagtcatccaaccatcttaaaatcaattttacatcctctataatcacctttta 38516170  T
Q  209 acccactagaattgaaaccaaacacatgc 237  Q
     |    |||||||||||||||||| ||||    
T  38516169 cctttttagaattgaaaccaaacaaatgc 38516141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 42624919 - 42624993
Alignment:
Q  81 aaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaattcta 155  Q
    ||||||||||||||||  |||||||||||| ||||||| ||| ||||||||||| |||||  |||||||||||||    
T  42624919 aaatcaattgtagaagttaaaagctataaactgtagcttcaaatagaatcaattctacaaataaaatcaattcta 42624993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 24776430 - 24776360
Alignment:
Q  42 atttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaatt 112  Q
    |||||| |||||| ||||||||||||||| |||| | |||||||||||||||||| |||||| || |||||    
T  24776430 atttatgtaaaaggggatttaacaataaaattaagggtaaaatcaattgtagaagtcaaaagttacaaatt 24776360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 28534884 - 28534839
Alignment:
Q  42 atttatataaaagtggatttaacaataaatttaaagctaaaatcaa 87  Q
    |||||||||||||||||||||||||||||||||| | |||||||||    
T  28534884 atttatataaaagtggatttaacaataaatttaatgttaaaatcaa 28534839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 24098199 - 24098284
Alignment:
Q  127 aatcaattgtacaatcaaaatcaatt---ctataaatcatccaaacatcataaaatcaattccacaatctctagaatcacttttaa 209  Q
    |||||||| || || |||||||||||   ||||||||||||  || ||||||||||||||||||||| ||  ||||||||||||||    
T  24098199 aatcaattctagaaacaaaatcaattaccctataaatcatcttaatatcataaaatcaattccacaaccttcagaatcacttttaa 24098284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 38131637 - 38131564
Alignment:
Q  58 atttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaa 132  Q
    ||||||| |||||||||| |||||| |||||||||||||  ||||| |||||||| || || |||||||||||||    
T  38131637 atttaacgataaatttaaggctaaa-tcaattgtagaagttaaaagttataaattctaacttcaagtagaatcaa 38131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 4344889 - 4344828
Alignment:
Q  14 gaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaa 75  Q
    ||||||||||| ||  ||||||| |||||||||| || ||||| ||||||||||||||||||    
T  4344889 gaatataaagtgattaatgtttggatgtatttatgtacaagtgaatttaacaataaatttaa 4344828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 15810532 - 15810590
Alignment:
Q  53 agtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaat 111  Q
    ||||||||| ||||||||||||| || ||||||||||||| ||| |||||  |||||||    
T  15810532 agtggatttcacaataaatttaaggcaaaaatcaattgtaaaagtcaaaatatataaat 15810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 24774914 - 24774828
Alignment:
Q  124 tagaatcaattgtacaatcaaaatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctctagaatcactttt 207  Q
    ||||||||||| |||||  ||| ||||||||    ||||||||||||||||  |||||||||||  | |||||||||||||| ||||    
T  24774914 tagaatcaattctacaagtaaactcaattctcatttaaatcatccaaacatgctaaaatcaattatagaatctctagaatcaatttt 24774828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 30220232 - 30220403
Alignment:
Q  69 aatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaattcta---taaatcatcc 165  Q
    ||||||| | ||||||||||||||||||  || | ||| ||||| ||||| ||||||||||||||| ||||| ||||||||||||||   ||||||||||    
T  30220232 aatttaagggtaaaatcaattgtagaagcaaagaactacaaattatagcttcaagtagaatcaattatacaagcaaaatcaattctactttaaatcatcc 30220331  T
Q  166 aaacatcataaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaacacatgc 237  Q
    |||||||||| ||||||||  |||| |||||||||||||||| || | ||| |||||||| |||||||||||    
T  30220332 aaacatcatataatcaattatacaacctctagaatcacttttgactctctaaaattgaaatcaaacacatgc 30220403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 3887431 - 3887536
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagc-tccaagtagaa 128  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||| |||| |  ||||||||    
T  3887431 atgtttggatgtatttatgtaaaagtggatttaataataaatttaaggctaaaatcaattgtagaagccaaaagctacaaattctagcttttaagtagaa 3887530  T
Q  129 tcaatt 134  Q
    ||||||    
T  3887531 tcaatt 3887536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 41521705 - 41521743
Alignment:
Q  58 atttaacaataaatttaaagctaaaatcaattgtagaag 96  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  41521705 atttaacaataaatttaaagataaaatcaattgtagaag 41521743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 47978400 - 47978470
Alignment:
Q  13 tgaatataaagtaatcgatgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaa 83  Q
    ||||| |||||| ||  ||| ||| |||||||||| | |||||| |||||||| |||||||||||||||||    
T  47978400 tgaatgtaaagtgatttatggttggatgtatttatgtcaaagtgaatttaacactaaatttaaagctaaaa 47978470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 15515071 - 15515163
Alignment:
Q  49 taaaagtggatttaacaata-aatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaa 140  Q
    |||||||||||| |||| || || | || |||||||| ||||| ||||| ||||| ||| ||||| ||||| || |||||||||||| |||||    
T  15515071 taaaagtggattgaacactataactcaaggctaaaattaattgcagaagccaaaacctacaaattctagcttcatgtagaatcaattctacaa 15515163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 32421915 - 32422133
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| |||||||||| |||||||| ||||| |||| ||||||| |||||||||||||||||||| |||| |||| ||||||||||| |||| |||||    
T  32421915 atgtttggatgtatttatgtaaaagtgaatttatcaatgaatttaaggctaaaatcaattgtagaagccaaatgctacaaattgtagcttcaaggagaat 32422014  T
Q  130 caattgtacaatcaaaatcaatt---ctataaatcatccaaac-atcataaaatcaattccaca--atc-------tctagaatcacttttaacccacta 216  Q
    ||||| |||||  ||||| ||||   || |||||||||||||| | ||| |||||||||| |||  |||       |||||||||||||||  ||| |||    
T  32422015 caattctacaagtaaaattaattttactttaaatcatccaaacaaacat-aaatcaattctacaacatctacaacatctagaatcacttttggccctcta 32422113  T
Q  217 gaattgaaaccaaacacatg 236  Q
    ||||||||||||||||||||    
T  32422114 gaattgaaaccaaacacatg 32422133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 6095314 - 6095439
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| || ||||||| ||||| || |||||||||| ||||||  |||||||| || |||||||| ||||| ||| |||| |||||| | ||||||||    
T  6095314 atgtttgaatatatttatgtaaaaatgaatttaacaatgaatttatggctaaaataaaatgtagaagccaaaaactacaaatcgtagcttcgagtagaat 6095413  T
Q  130 caattgtacaatcaaaatcaattcta 155  Q
     |||| ||||||||||||||||||||    
T  6095414 aaattctacaatcaaaatcaattcta 6095439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 1879247 - 1879089
Alignment:
Q  42 atttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaat 141  Q
    |||||||| |||||| ||||||||| |||||| ||||   ||||||||||| |||  |||||||||||||| ||||| ||| |  |||||||| |||||     
T  1879247 atttatatgaaagtgaatttaacaaaaaatttgaagcattaatcaattgtataagttaaaagctataaattttagcttcaaatgtaatcaattctacaag 1879148  T
Q  142 caaaatcaattc---tataaatcatccaaacatcataaaatcaattccacaatctctag 197  Q
     ||||| |||||   | ||| |||||||||||| ||||||||||||| |||||||||||    
T  1879147 taaaataaattctcttttaactcatccaaacatgataaaatcaattctacaatctctag 1879089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 23647726 - 23647622
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| |||||||||  |||||||||||||| | |||||||||| | || ||||||||||||||| ||||||  | ||||||||||| ||||||||||    
T  23647726 atgtttggatgtatttacgtaaaagtggatttagccataaatttaaggttataatcaattgtagaagtcaaaagtaacaaattgtagcttcaagtagaat 23647627  T
Q  130 caatt 134  Q
    |||||    
T  23647626 caatt 23647622  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 23810847 - 23810951
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| |||||||||  |||||||||||||| | |||||||||| | || ||||||||||||||| ||||||  | ||||||||||| ||||||||||    
T  23810847 atgtttggatgtatttacgtaaaagtggatttagccataaatttaaggttataatcaattgtagaagtcaaaagtaacaaattgtagcttcaagtagaat 23810946  T
Q  130 caatt 134  Q
    |||||    
T  23810947 caatt 23810951  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 5970011 - 5970103
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatc 130  Q
    |||||||| | ||| |||||||||||| |||||||||| ||||||||||| |||||||| ||||||||  ||||| || || |||||||||||    
T  5970011 atgtatttgtgtaatagtggatttaaccataaatttaaggctaaaatcaactgtagaagccaaaagctgcaaattctaacttcaagtagaatc 5970103  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 5465461 - 5465615
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgta 137  Q
    |||||||||| ||||| | |||||| |||| ||||||| |||||  ||||  ||||||| ||||| ||| ||||||||||| |||||||||| |||| ||    
T  5465461 atgtatttatgtaaaaattgatttatcaatgaatttaaggctaat-tcaacagtagaagccaaaaactacaaattgtagcttcaagtagaattaattcta 5465559  T
Q  138 caatcaaaatcaatt---ctataaatcatccaaacatcataaaatcaattccacaa 190  Q
    ||   ||||| ||||   || ||| ||||||||| |||||||||||||||| ||||    
T  5465560 cagggaaaattaattatactttaattcatccaaatatcataaaatcaattctacaa 5465615  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 19563802 - 19563903
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| ||||||||||||||||||  |||||||||| |||||||  | ||||||||||| |||   ||||||||| ||||| ||||| | ||||||||    
T  19563802 atgtttgaatgtatttatataaaagtatatttaacaatgaatttaagacaaaaatcaattgaagagaccaaaagctacaaattatagctactagtagaat 19563901  T
Q  130 ca 131  Q
    ||    
T  19563902 ca 19563903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 41606352 - 41606243
Alignment:
Q  31 tgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatc 130  Q
    |||||| || ||||||| |||||||| |  | || |||||||||| | |||||| ||||||||||  ||||||||||||||| |||||  ||||||||||    
T  41606352 tgtttggatttatttatgtaaaagtgaacctgaccataaatttaaggttaaaattaattgtagaaatcaaaagctataaattctagcttaaagtagaatc 41606253  T
Q  131 aattgtacaa 140  Q
    |||| |||||    
T  41606252 aattatacaa 41606243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 16572956 - 16573023
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagct 105  Q
    |||||||||| |||| || ||||||| ||||||||||| | ||||||||||||||||||| |||||||    
T  16572956 atgtatttatgtaaacgtagatttaataataaatttaaggttaaaatcaattgtagaagataaaagct 16573023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 6988214 - 6988081
Alignment:
Q  38 atgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgta 137  Q
    |||||||||| |||||||| |||||||  ||| ||||| | |||||||||||||| ||| ||||  ||  || |||||| | | |||||| |||||| ||    
T  6988214 atgtatttatctaaaagtgaatttaacggtaattttaaggataaaatcaattgtaaaagtcaaa--ctcaaatttgtagtttcgagtagattcaattcta 6988117  T
Q  138 caatcaaaatcaatt---ctataaatcatccaaaca 170  Q
    ||| |||||||||||   |||||| |||||||||||    
T  6988116 caaacaaaatcaatttaactataagtcatccaaaca 6988081  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 1872255 - 1872417
Alignment:
Q  78 ctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatcaatt---ctataaatcatccaaacatcat 174  Q
    ||||||||||||| ||||| ||||| ||  ||||| |||||||| | |||||||||| ||||| |||||||||||    | |||||||||||||||| ||    
T  1872255 ctaaaatcaattgcagaagccaaaaactgcaaattctagctccatgcagaatcaattctacaagcaaaatcaattttcttttaaatcatccaaacatgat 1872354  T
Q  175 aaaatcaattccacaatctctagaatcacttttaacccactagaattgaaaccaaacacatgc 237  Q
    |||| |||||| |||   |||| |||||||||| | || | | ||||| ||||||||| ||||    
T  1872355 aaaaacaattctacaccttctaaaatcacttttgatcctccaaaattgtaaccaaacatatgc 1872417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 34800798 - 34800907
Alignment:
Q  30 atgtttgtatgtatttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaat 129  Q
    ||||||| ||||||||  |||||||||||||| ||||||||||||| | |||||||||  ||||||| ||||| ||| ||||| ||||| |||||  |||    
T  34800798 atgtttggatgtatttgcataaaagtggatttgacaataaatttaaggttaaaatcaagcgtagaagccaaaa-ctacaaattctagcttcaagtgaaat 34800896  T
Q  130 caattgtacaa 140  Q
    ||||| |||||    
T  34800897 caattctacaa 34800907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 16442022 - 16441981
Alignment:
Q  55 tggatttaacaataaatttaaagctaaaatcaattgtagaag 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  16442022 tggatttaacaataaatttaaagataaaatcaattgtagaag 16441981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 34805261 - 34805366
Alignment:
Q  49 taaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaatc 148  Q
    ||||||||||||| || |||| ||||| | ||||||||| |||| |||  |||||||| ||||| ||| | |||||||||| ||||  |||| |||||||    
T  34805261 taaaagtggatttgactataattttaaggttaaaatcaagtgtaaaagctaaaagctacaaattatagtttcaagtagaattaattccacaaacaaaatc 34805360  T
Q  149 aattct 154  Q
    ||||||    
T  34805361 aattct 34805366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 579013 - 578915
Alignment:
Q  49 taaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaat 147  Q
    |||||||| ||| ||| ||||||| || ||||||||||| | | |||| ||||| ||| ||||| ||||| ||||||| ||||||| ||||| ||||||    
T  579013 taaaagtgaattgaacgataaattcaaggctaaaatcaactatggaagtcaaaaactaaaaattctagcttcaagtagtatcaattctacaagcaaaat 578915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 12104180 - 12104251
Alignment:
Q  42 atttatataaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattg 113  Q
    |||||| ||||| ||||||| || ||| |||||| |||||||||||||||| ||| |||||| |||| ||||    
T  12104180 atttatgtaaaaatggattttacgatagatttaaggctaaaatcaattgtacaagtcaaaagttatatattg 12104251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 16243598 - 16243682
Alignment:
Q  49 taaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaat 133  Q
    |||||||||||| |||| ||||||| || ||  ||||||||||| ||  ||||| ||||||||| ||| | ||| ||||||||||    
T  16243598 taaaagtggattcaacattaaatttgaaactttaatcaattgtataaatcaaaaactataaattctagtttcaaatagaatcaat 16243682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 24803913 - 24804023
Alignment:
Q  103 gctataaattgtagctccaagtagaatcaattgtacaatcaa----aatcaattcta---taaatcatccaaacatcataaaatcaattccacaatctct 195  Q
    |||| ||||| ||||| ||| ||||||||||| ||||| |||    |||||||| ||   |||||||||||||||| ||| ||||||||| |||| ||||    
T  24803913 gctacaaattctagcttcaaatagaatcaattctacaagcaagcaaaatcaattgtactttaaatcatccaaacatgatataatcaattctacaacctct 24804012  T
Q  196 agaatcactttt 207  Q
    || |||||||||    
T  24804013 ag-atcactttt 24804023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 207066 - 207163
Alignment:
Q  49 taaaagtggatttaacaataaatttaaagctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatcaattgtacaatcaaaa 146  Q
    ||||||||||||||||||||||||| | |||| ||| ||  ||||||| ||||||||| || | |||||| |||||||||| |||| ||||| |||||    
T  207066 taaaagtggatttaacaataaattttaggctacaattaaaagtagaagccaaaagctacaactagtagcttcaagtagaattaattctacaagcaaaa 207163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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