View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_22 (Length: 302)
Name: NF19216_high_22
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 52242325 - 52242607
Alignment:
| Q |
4 |
gagatgaagcaagtggtcgaagagcaggactgaaagcagcaccatcacgtctctttggtgttgaacacccacttggagtttgagactgtgaatcttctcc |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242325 |
gagaagaagcaagtggtcgaagagcaggactgaaagcagcaccatcacgtctctttggtgttgaacacccacttggagtttgagactgtgaatcttctcc |
52242424 |
T |
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| Q |
104 |
tccaaatatatcatcaaagaaatcttttccttttcttctcctcctaactccactatcctcaccaaacaccggtttctcgctctcaggcggaggaggccaa |
203 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52242425 |
tccaaatatatcatcaaaaaaatcttttccttttcttctcctcctagctccactatcctcaccaaacactggtttctcgctctcaggcggaggaggccaa |
52242524 |
T |
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| Q |
204 |
ctacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccgcggcggtcccccaaacacatcattaaaatc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52242525 |
ctacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccgcggtggtcccccaaacacatcattaaaatc |
52242607 |
T |
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