View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19216_high_32 (Length: 260)
Name: NF19216_high_32
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 38729668 - 38729897
Alignment:
| Q |
19 |
aaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcatgcatttccaagagacaagcatacgtagatggagttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38729668 |
aaacctgcattagtcattgaattgtacagtttcatagcatgatcgatttgtccagacgcagcatgcatttccaagagacaagcatatgtagatggagttg |
38729767 |
T |
|
| Q |
119 |
gtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttccctgattttgcatgtgactcaatgatcaatgtaaacaagc |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38729768 |
gtagaaatccagctttctcc----atatctgaaaatgcagacatagcaatatcaagcttccctgattttgcatgtgactcaatgatcaatgtatacaagc |
38729863 |
T |
|
| Q |
219 |
caaagtttggtctgaaccctgcgaatttcatctc |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
38729864 |
caaagtttggtctgaaccctgctaatttcatctc |
38729897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 385874 - 385674
Alignment:
| Q |
19 |
aaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacgcagcatgcatttccaagagacaagcatacgtagatggagttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||| |||||||| || |||||| ||||| |
|
|
| T |
385874 |
aaacctgcattagtcattgaattgtacagtttcatggcatgatcaatttgtccggatgaagcatgcatttccaatagacaagcgtatgtagatagagtta |
385775 |
T |
|
| Q |
119 |
gtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagcttccctgattttgcatgtgactcaatgatcaatgtaaacaagc |
218 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
385774 |
gtagaaatccagctttctcc----atgtctgaaaatgcagacatagcaatatcaagcttccctgattttgcatgagactcgatgatcaatgtatacaagc |
385679 |
T |
|
| Q |
219 |
caaag |
223 |
Q |
| |
|
||||| |
|
|
| T |
385678 |
caaag |
385674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University