View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19216_high_33 (Length: 252)
Name: NF19216_high_33
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_33 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 42480852 - 42480617
Alignment:
| Q |
17 |
tccaagatccatatataggaaactgtataaattaagatggatcggctgaaatcatttattgctgatgcagcatcatcaagattctcaataacnnnnnnnc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42480852 |
tccaagatccatatataggaaactgtataaattaagatggatcggctgaaatcatttattgctgatgcagcatcatcaagattctcaataacaaaaaaac |
42480753 |
T |
|
| Q |
117 |
tccactcggtgtgattaattacaccaattaaagaatttgtatgtgaatcttgatgctgctgcacctgcaaacaacgactatatatgattggttcattctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42480752 |
tccactcggtgtgattaattacaccaattaaagaatttgtatgtgaatcttgatgctgctgcacctgcaaacaacgactatatatgatgggttcattctt |
42480653 |
T |
|
| Q |
217 |
gcatagcaacctgttgtttttgcgtatatatagagt |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42480652 |
gcatagcaacctgttgtttttgtgtatatatagagt |
42480617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 21427343 - 21427311
Alignment:
| Q |
71 |
tttattgctgatgcagcatcatcaagattctca |
103 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
21427343 |
tttatggctgatgcagcatcatcaagattctca |
21427311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University