View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_35 (Length: 251)
Name: NF19216_high_35
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_35 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 5998518 - 5998282
Alignment:
| Q |
16 |
gaagcaacaggcaaaattcatttagattcattcatcatttttcattatctttcggaataattctcaactcgtaccatcccacacaaaagcttgtacaact |
115 |
Q |
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| T |
5998518 |
gaagcaacaggcaaaattcatttagattcattcatcatttttcattatctttcggaataattctcaactcgtaccatcccacacaaaagcttgtacaact |
5998419 |
T |
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| Q |
116 |
ttattccaatcatgacaaaatactaaaataacatctatagagtcaggtta-aaaagaggaaccaaatcaacagaaactaaactgaactacaatacacttt |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998418 |
ttattccaatcatgacaaaataataaaataacatctatagagtcaggttataaaagaggaaccaaatcaacagaaactaaactgaactacaatacacttt |
5998319 |
T |
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| Q |
215 |
tatgttggtgaccacaaggctttataaaacgtagttt |
251 |
Q |
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| T |
5998318 |
tatgttggtgaccacaaggctttataaaacgtagttt |
5998282 |
T |
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