View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_36 (Length: 249)
Name: NF19216_high_36
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_36 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 31025372 - 31025616
Alignment:
| Q |
9 |
gaacaatatacacctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattgaaatattagttaaaattctaatattaaa |
108 |
Q |
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| T |
31025372 |
gaacaacatactcctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattcaaatattagttaaaattctaatattaaa |
31025471 |
T |
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| Q |
109 |
cgatatttattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagtac----attta |
204 |
Q |
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| T |
31025472 |
cgatatttattagtatatcaaatgcaacattgctacgaggaatatgtgaacaaactcatatcgctaaaaattgattgaaagtttttagtacattaattta |
31025571 |
T |
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| Q |
205 |
ttttatgaaaagttctaaattgagaattaaaataaagggttaatt |
249 |
Q |
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| T |
31025572 |
ttttatgaaaagttctaaattgagaattaaaataaagggttaatt |
31025616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 31073711 - 31073784
Alignment:
| Q |
176 |
aaattgattgaatgcttttagtacatttattttatgaaaagttctaaattgagaattaaaataaagggttaatt |
249 |
Q |
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| T |
31073711 |
aaattgattgaatgcttttagcatatttattttatgaaaagttataaattaagaattataataattggttaatt |
31073784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 31040719 - 31040751
Alignment:
| Q |
205 |
ttttatgaaaagttctaaattgagaattaaaat |
237 |
Q |
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| T |
31040719 |
ttttatgaaaagttctaaattgagaattaaaat |
31040751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 33533813 - 33533945
Alignment:
| Q |
106 |
aaacgatatttattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagtacatttat |
205 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
33533813 |
aaacgatatttattagtatatcaaatgcaacatttttatgatgaatatgtgtacaaactcatatcgttaaaatttgattgaatgcttttagtacatttat |
33533912 |
T |
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| Q |
206 |
tttatgaaaagttctaaattgagaattaaaata |
238 |
Q |
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| T |
33533913 |
tttatgaaaagtcctaaattgaaatttaaaata |
33533945 |
T |
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