View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_39 (Length: 239)
Name: NF19216_high_39
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 36306550 - 36306768
Alignment:
| Q |
18 |
cctcaatgacaagaattgagaatttgagtataaatgtgaagtaaaggaagtgtttgtactcagaaattctgcttttgttgtacatttagatatatggaca |
117 |
Q |
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| T |
36306550 |
cctcaatgacaagaattgagaatttgagtataaatgtgaagtaaataaagtgtttgtactcagaaattttgcttttgttgtacatttagatatatggaca |
36306649 |
T |
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| Q |
118 |
gttgaaaaaatacagacatgtgaattctgctattattctattgcatacatagctaataaatatttcaaagaattccatcatnnnnnnnnnnnnttcaaag |
217 |
Q |
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| T |
36306650 |
gttgaaaaaatacagacatgtgaattctgctattattctattgcatacatagctaataaatatttcaaagaattccatcataaaaaagaaaaattcaaag |
36306749 |
T |
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| Q |
218 |
aattataaattatcacatc |
236 |
Q |
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||||||||||||||||||| |
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| T |
36306750 |
aattataaattatcacatc |
36306768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 36321940 - 36322104
Alignment:
| Q |
20 |
tcaatgacaagaattgagaatttgagtataaatgtgaagtaaaggaagtgtttgtactcagaaattctgcttttgttgtacatttagatatatggacagt |
119 |
Q |
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| T |
36321940 |
tcaatgacaagaattgagaatttgagtataaatgtgaaataaataatgtgtctgtactcagaaattctgcttttgttgtacatttagatacat-gacaat |
36322038 |
T |
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| Q |
120 |
tgaaaaaatacagacatgtgaattctgctattattctattgcatacatagctaataaatatttcaa |
185 |
Q |
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| T |
36322039 |
taaaataatgcattcatgtgaatgccgatattattatgctgcatacatagttcataaatatttcaa |
36322104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 30784179 - 30784345
Alignment:
| Q |
18 |
cctcaatgacaagaattgagaatttgagtataaatgtgaagtaaaggaagtgtttgtactcagaaattctgcttttgttgtacatttagatatatggaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||| ||| ||||| || |||| |
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| T |
30784179 |
cctcaatgacaagaattgagaatttgagtataaatgtgaaataaataatgtgtctgtactcagaaattctgcttttgttgtagattcagatacat-gaca |
30784277 |
T |
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| Q |
118 |
gttgaaaaaatacagacatgtgaattctgctattattctattgcatacatagctaataaatatttcaa |
185 |
Q |
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| T |
30784278 |
attgaaataatgcagatatgtgaatgctgatattattatgctgcatacatagttcataaatatttcaa |
30784345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 45628026 - 45628192
Alignment:
| Q |
18 |
cctcaatgacaagaattgagaatttgagtataaatgtgaagtaaaggaagtgtttgtactcagaaattctgcttttgttgtacatttagatatatggaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||| ||||||| ||||||||||||||||| ||||| || |||| |
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| T |
45628026 |
cctcaatgacaagaattgagaatttgagtataaatgtgaaacaaaaaatgtgtctgtactgagaaattatgcttttgttgtacattcagatacat-gaca |
45628124 |
T |
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| Q |
118 |
gttgaaaaaatacagacatgtgaattctgctattattctattgcatacatagctaataaatatttcaa |
185 |
Q |
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|||||| ||| ||| |||||||| ||| ||||||| | ||||||||||| | ||||||||||||| |
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| T |
45628125 |
attgaaataatggagatatgtgaatgctggtattattatgctgcatacatagttcataaatatttcaa |
45628192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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