View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_4 (Length: 536)
Name: NF19216_high_4
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 43882381 - 43882897
Alignment:
| Q |
1 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacgaatggatgaccataaaactgagtttctccattcgcctgaaaaggctaggcga |
100 |
Q |
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| T |
43882381 |
atcaagtggaagttttaagcaccttgttgaaggtgataccaaacaacgaatggatgaccataaaactgagtttctccattcgcctgaaaaggctaggcga |
43882480 |
T |
|
| Q |
101 |
gtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaacaatagtattgctctcggcacagaaactgatggttcttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43882481 |
gtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaacaatagtcttgctctcggcacagaaactgatggttcttctg |
43882580 |
T |
|
| Q |
201 |
atagttccagtatgagtgaagccaaaaagacttcagataagtcaaagacgtgagtagtgcttatgctattacagcatatttgcagaggaacaacatatgc |
300 |
Q |
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| T |
43882581 |
atagttccagtatgagtgaagccaaaaagacttcagataagtcgaagacgtgagtagtgcttatgctattacagcatatttgcagaggaacaacatatgc |
43882680 |
T |
|
| Q |
301 |
atcgcttagaagtcaagtctaaaattaatgtatatgtgatatttatggttaaaattttgatctgtgttttgcaggtccaaagtaatatccagaactgttc |
400 |
Q |
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| T |
43882681 |
atcgcttagaagtcaagtctaaaattaatgtatatgtgatatttatggttaaaattttgatctgtgttttgcaggtccaaagtaatatccagaactgttc |
43882780 |
T |
|
| Q |
401 |
aagcggtaaggaaatttggccgaatctcatctaccacagctgtagcaaaggacccctcaaagaaatcatcaggtatatgcatgttaaaatgaaattctct |
500 |
Q |
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| T |
43882781 |
aagcggtaaggaaatttggccgaatctcatctaccacagctgtagcaaaggacccctcaaagaaatcatcaggtatatgcaagttaaaatgaaattctct |
43882880 |
T |
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| Q |
501 |
cgatttatgctgtatct |
517 |
Q |
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| T |
43882881 |
cgatttatgctgtatct |
43882897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 43881706 - 43881867
Alignment:
| Q |
1 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacgaatggatgaccataaaactgagtttctccattcgcctgaaaaggctaggcga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
43881706 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgaccataaaactgagtatctccgttcgcctgaaaaggctaggcga |
43881805 |
T |
|
| Q |
101 |
gtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaacaa |
162 |
Q |
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| T |
43881806 |
gtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaa |
43881867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 43881931 - 43882092
Alignment:
| Q |
1 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacgaatggatgaccataaaactgagtttctccattcgcctgaaaaggctaggcga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
43881931 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgaccataaaactgagtatttccgttcgcctgaaaaggctaggcga |
43882030 |
T |
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| Q |
101 |
gtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaacaa |
162 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
43882031 |
gtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaa |
43882092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 43882156 - 43882317
Alignment:
| Q |
1 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacgaatggatgaccataaaactgagtttctccattcgcctgaaaaggctaggcga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |
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| T |
43882156 |
atcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacgaatggatgaccataaaactgagtttctccgttcgcctgaaaaagctaggcaa |
43882255 |
T |
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| Q |
101 |
gtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaacaa |
162 |
Q |
| |
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||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
43882256 |
gtaactcgaggagtctcggctacagattttcaacaaaaatcaagtgatttttctgacaacaa |
43882317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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