View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_6 (Length: 519)
Name: NF19216_high_6
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 10 - 506
Target Start/End: Original strand, 1922826 - 1923326
Alignment:
| Q |
10 |
tcatcaaagtatagccttgtatcaagcaaaaccatgttgtctacaaatcccattagagctctttttacaagacttatgcaccattccatccataaagatt |
109 |
Q |
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| T |
1922826 |
tcatcaaagtatagccttgtatcaagcaaaagcatgtggtctacaaatcccattagagctctttttacaagacttatgcaccattccatccataaagatt |
1922925 |
T |
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| Q |
110 |
tccatgaagcagtgaccaaaatgtccatctttgatgcttttctcttctatgtacaaatatccttcttcatcaaatatatactatattgttcttgttaccc |
209 |
Q |
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| T |
1922926 |
tccatgaagcagtgaccaaaatgtccatctttgatgcttttctcttctatgtacaaatacccttcttcatcaaatatatactatattgttcttgttgccc |
1923025 |
T |
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| Q |
210 |
taatagttacatcacaattgtgtttcgaaaatattttgttgat----tataaagatcagacgactcatattttaagttagagttgatttagtaaaatcaa |
305 |
Q |
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| T |
1923026 |
taatagttacatcacaattgtgtttcgaaaatattttgttgatatattataaagatcagacgactcatattttaagttagagttgatttagtaaaatcaa |
1923125 |
T |
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| Q |
306 |
tgagtcgtttcatctttattatataatcagaatctaaactttgtgttttctcttactagttagtcgtttcatctttatgttatagtcgatacctctaatt |
405 |
Q |
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| T |
1923126 |
tgagtcgtttcatctttattatatagtcagaatctaaactttgtgttttctcttactagtcagtcgttttatctttatgttatagtcgatacctctaatt |
1923225 |
T |
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| Q |
406 |
aaatgatacttttgttgatttacacagattgtacactccgttgataagatggcaatatggccccgtttacctgttttcttaggcctattttacttgttca |
505 |
Q |
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| T |
1923226 |
aaatgatacttttgttgatttacacagattgtacactccgttgataagatggcaatatggccccgtttacctgttttcttaggcctattttacttgttca |
1923325 |
T |
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| Q |
506 |
t |
506 |
Q |
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| T |
1923326 |
t |
1923326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 1936644 - 1936737
Alignment:
| Q |
88 |
caccattccatccataaagatttccatgaagcagtgaccaaaatgtccatctttgatgcttttctcttctatgtacaaatatccttcttcatca |
181 |
Q |
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| T |
1936644 |
caccatgccatccataaagatttccatgcagcagtggcaaaaatgtccatcatagatgcttttctcttccttgtataaatacttttcttcatca |
1936737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 1952080 - 1952243
Alignment:
| Q |
25 |
cttgtatcaagcaaaaccatgttgtct------acaaatcccattagagctctttttacaagacttatgcaccattccatccataaagatttccatgaag |
118 |
Q |
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| T |
1952080 |
cttgtatcaagcaaaatcatgtggtctttagtaacagatcccattagaaatcttgttacaatagttatacaacattccttccataaagatttccatgaag |
1952179 |
T |
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| Q |
119 |
cagtgaccaaaatgtccatctttgatgcttttctcttctatgtacaaatatccttcttcatcaa |
182 |
Q |
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| T |
1952180 |
tagtgaagaaaatgaccatcatagatgcttttcttttctttatacgaataccctcctccatcaa |
1952243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 1937117 - 1937187
Alignment:
| Q |
431 |
agattgtacactccgttgataagatggcaatatggccccgtttacctgttttcttaggcctattttacttg |
501 |
Q |
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| T |
1937117 |
agattgtacactccattgacaagttgggaatatggcaccgtttacctgttttcttagggctaatatacttg |
1937187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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