View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_1 (Length: 624)
Name: NF19216_low_1
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 14 - 606
Target Start/End: Complemental strand, 39536238 - 39535646
Alignment:
| Q |
14 |
atcaatcaaaaaatactccaaataaaaaacatcattcatttttgtcattctgtcaact-----agcaattgtaggaatgaaccaccaaatagataaaatt |
108 |
Q |
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| T |
39536238 |
atcaatcaaaaaatactccaaataaaaaacatcattcatttttgtcattctgtcaactcaactagcaattgtaggaatgaaccaccaaatagataaaatt |
39536139 |
T |
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| Q |
109 |
aatttcatttccacgacaactccaacagaaggagttgacaaaaggatgaacatgacttgcataataataatttagtgaaactataaacaaacctataaaa |
208 |
Q |
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| T |
39536138 |
aatttcatttccacaacaactccaacagaaggagttgacaaaaggatgaacatgacttgcataataataatttagtgaaactataaacaaacctataaaa |
39536039 |
T |
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| Q |
209 |
ctatatgcagtttcgtcatcatctaaggtatatgtctcctccatgcattcatctataacctgtgaagcatggacacaaatactgacaccaaccacggcca |
308 |
Q |
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| T |
39536038 |
ctatatgcagtttcgtcatcatctaaggtatatgtctcctccatgcattcatctataacctgtgaagcatggacacaaatactgacaccaaccacggcca |
39535939 |
T |
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| Q |
309 |
ccaacacataataatttgaaacaatgacataattcagtcccagtaataacattctattcgttgaacaaaataatgcggcaaataaatggggnnnnnnnct |
408 |
Q |
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| T |
39535938 |
ccaacacataataatttgaaacaatgacataattcagtcccagtaataacattctatgggttgaacaaaataatgcggcaaataaa-agggaaaaaaact |
39535840 |
T |
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| Q |
409 |
caaagttggataaataatatctatctaactcaatacatcatgtgtttgcacgtgcaaccaaaatgagaatcaaataaaactccaactatatcatcatcat |
508 |
Q |
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| T |
39535839 |
caaagttggataaataa----tatctaactcaatacatcatgtgtttgcacgtgaaaccaaaatgagaataaaataaaactccaactatatcatcatcat |
39535744 |
T |
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| Q |
509 |
taattcataattatccatagcctaaaaagaaaatgtaaatagttccaatcctactaccagtaccaccattctgtgtctgctggtatgcgctacattcc |
606 |
Q |
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| T |
39535743 |
taattcataattatccatagcctaaaaagaaaatgtaaatagttccaatcctactaccagtaccaccattctgtgtctgctggtatgcgctacattcc |
39535646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 24894488 - 24894520
Alignment:
| Q |
312 |
acacataataatttgaaacaatgacataattca |
344 |
Q |
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| T |
24894488 |
acacataataatttgaaaaaatgacataattca |
24894520 |
T |
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