View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_11 (Length: 427)
Name: NF19216_low_11
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 42387241 - 42387041
Alignment:
| Q |
19 |
gtacaaaccctacaaaccacataataaacaaccaaaaccgttacagcaagaatcactctaatcggaagaagagtcacaagcgcgaaaccaaggaaaagct |
118 |
Q |
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| T |
42387241 |
gtacaaaccctacaaaccacataataaacaaccaaaaccgttacagcaagaatcactctaatcggaagaagagtcacaagcgcgaaaccaaggaaaagct |
42387142 |
T |
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| Q |
119 |
tctccttggctcctaactctcctcttcccatcgtcccgtacacatcgttgcgaacatatgcggcgaatttcttctctaggtcttgtagctcctccgcggt |
218 |
Q |
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| T |
42387141 |
tctccttggctcctaactctcctcttcccatcgtcccgtacacatcgttgcgaacatatgcggcgaatttcttctctaggtcttgtagctcctccgcggt |
42387042 |
T |
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| Q |
219 |
t |
219 |
Q |
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| T |
42387041 |
t |
42387041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 242 - 408
Target Start/End: Complemental strand, 10306783 - 10306617
Alignment:
| Q |
242 |
aaatggaggagaaatgaaacgtaggaagtgaatcgattgctcgttgtatttcccgcgccggtggaggtggttgcgacggcggtggtgttgaatcggaggt |
341 |
Q |
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| T |
10306783 |
aaatggaggagaaatgaaacgtaggaagtgaatcgattgctcgttgtatttccggcgcaggttgaggtggttgcgacgacggtggtgttgaatcggaggt |
10306684 |
T |
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| Q |
342 |
gaaatggaaaggaatcggagggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatc |
408 |
Q |
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| T |
10306683 |
gaaatggaacggaatcggagggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatc |
10306617 |
T |
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