View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_12 (Length: 404)
Name: NF19216_low_12
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 34512036 - 34512420
Alignment:
| Q |
8 |
cagcacagaacaatcaaaaaggatggagaattgaaatcaatttg-cataagaaaggggcggcggcgctcatgctgggagatccctctaattaataacact |
106 |
Q |
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| T |
34512036 |
cagcaccgaacaatcaaaaaggatggagaaatgaaatcaatttgacataagaaaggggcggcggcgctcatgctgggagatccctctaattaataacact |
34512135 |
T |
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| Q |
107 |
tattgaacatgaatagaaatacatactaaacttgacaaaatatttctgcgatatatcaaatgcaaaaagtttttatacatatcattaaaataaactcatt |
206 |
Q |
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| T |
34512136 |
tattgaacatgaatagaaatacatactaaacttgacaaaatacctctgcgatatatcaaatgcaagaagtttttatacatatcattaaaataaactcatt |
34512235 |
T |
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| Q |
207 |
aattcttccgtcacctgcaaaattccagacaacaaatatctgaataataagggatcatttcatacaatcaattataccacaactagcttgatagttcatt |
306 |
Q |
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| T |
34512236 |
aattcttccgtcgcctgcaaaattccagacaacaaatatatgaataataaggtataatttcatacaatcaattataccacaactagcttgatagttcatt |
34512335 |
T |
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| Q |
307 |
agataatgctttagtatgccaatttaaatcacaaatcatagattcactataagaaataatgatacaattaattgaaagtgaaaaa |
391 |
Q |
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| T |
34512336 |
agataatgctttagtatgccaatttaaatcacaaatcatagattcactataagaaataatgatacaattaattgaaagtgaaaaa |
34512420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 34527200 - 34527325
Alignment:
| Q |
265 |
ttcatacaatcaattataccacaactagcttgatagttcattagataatgctttagtatgccaatttaaatcacaaatcatagattcactataagaaata |
364 |
Q |
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| T |
34527200 |
ttcatataatcaattataccacaactagcttgatggttcataaaataatgctatagtatggcaatttaaatcagaaatcatagattcactttaagaaata |
34527299 |
T |
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| Q |
365 |
atgatacaattaattgaaagtgaaaaa |
391 |
Q |
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| T |
34527300 |
atgatacaa-aaattgaaagtgaaaaa |
34527325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 3319438 - 3319522
Alignment:
| Q |
102 |
acacttattgaacatgaatagaaatacatactaaacttgacaaaatatttctgcgatatatcaaatgcaaaaagtttttatacat |
186 |
Q |
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| T |
3319438 |
acacttattgaacatgaataggaatacatactaaacttgacaaaatacctctgcgatatatcaaatgcaagaagtttttagacat |
3319522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 3319612 - 3319700
Alignment:
| Q |
265 |
ttcatacaatcaattataccacaactagcttgatagttcattagataatgctttagtatgccaatttaaatcacaaatcatagattcac |
353 |
Q |
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| T |
3319612 |
ttcatacaatcaattataccacaactagcttgatggttcattaaataatgcaatagaatgccaatttaaatcacaagtcatagattcac |
3319700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 40788332 - 40788248
Alignment:
| Q |
8 |
cagcacagaacaatcaaaaaggatggagaattgaaatcaatttg-cataagaaaggggcggcggcgctcatgctgggagatccct |
91 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
40788332 |
cagcaccgaacaataaaaaaggatggagaattgaaatcaatttgacataagaatggggcggcggcgctcatgctgggagatccct |
40788248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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