View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_15 (Length: 370)
Name: NF19216_low_15
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 7278310 - 7278504
Alignment:
| Q |
167 |
atcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcctccttaa------cctcctcaaatccattt---------- |
250 |
Q |
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| T |
7278310 |
atcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctac |
7278409 |
T |
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| Q |
251 |
-----tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
340 |
Q |
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| T |
7278410 |
cctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7278504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 7375529 - 7375335
Alignment:
| Q |
167 |
atcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcctccttaa------cctcctcaaatccattt---------- |
250 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||| |
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| T |
7375529 |
atcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctac |
7375430 |
T |
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| Q |
251 |
-----tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
340 |
Q |
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| T |
7375429 |
cctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7375335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 22922070 - 22922023
Alignment:
| Q |
1 |
atcactctttgtacgataaaagtatgtggaataatatttggtatcttg |
48 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22922070 |
atcactctttgtacgataaaagtatgtgcaataatatttggtatcttg |
22922023 |
T |
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