View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_16 (Length: 366)
Name: NF19216_low_16
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 46532038 - 46532246
Alignment:
| Q |
17 |
ctgcgtactatgctcatctggctgcttacagagcgcgattctacatggaacctgatgtccatgaaaatgcaaaattgcaagttacaagatcgaaagtcga |
116 |
Q |
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| T |
46532038 |
ctgcgtactatgctcatctggctgcttacagagcgcgattctacatggaacctgatgtccatgaaaatgcaaaatcgcaagttacaggatcgaaagtcga |
46532137 |
T |
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| Q |
117 |
gtcagttcgaccactaccagctctaaaagagaaggtgaagaaagtaatgttttactgttgaatgaggggctttgtaggacgacttccaagtagagaaatt |
216 |
Q |
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| T |
46532138 |
gtcagttcgaccactaccagctctaaaagagaaggttaagaaagtaatgttttactgttgaatgaggggctttgtaggacgacttccaagtagagaaatt |
46532237 |
T |
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| Q |
217 |
ggttcattt |
225 |
Q |
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||||||||| |
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| T |
46532238 |
ggttcattt |
46532246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 46532267 - 46532400
Alignment:
| Q |
222 |
atttttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaaaataatggctcttaatgtagaaattattggttcttaaatttaattat |
321 |
Q |
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| T |
46532267 |
atttttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaaaataatggctcttaatgtagaaattattggttcttaaatttaattat |
46532366 |
T |
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| Q |
322 |
ttcaatcttctctcagcattcaaacttagaagaa |
355 |
Q |
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| T |
46532367 |
ttcaatcttctctcagcattcaaacttagaagaa |
46532400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 43018737 - 43018607
Alignment:
| Q |
226 |
ttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaaaataatggctcttaatgtagaaattattggttcttaaatttaattatttca |
325 |
Q |
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| T |
43018737 |
ttgacatagtataagttttgtttcttaggctttctggtgaataaccaaagataatgcctctaaatgtagaaattattggttcttaaatataattatttca |
43018638 |
T |
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| Q |
326 |
atcttctctcagcattcaaacttagaagaat |
356 |
Q |
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| T |
43018637 |
accttccgtcggccttcaaacttagaagaat |
43018607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 24599898 - 24599937
Alignment:
| Q |
142 |
aaagagaaggtgaagaaagtaatgttttactgttgaatga |
181 |
Q |
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| T |
24599898 |
aaagagaatgtgaagaatgtaatgttttactgttgaatga |
24599937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 24614216 - 24614177
Alignment:
| Q |
142 |
aaagagaaggtgaagaaagtaatgttttactgttgaatga |
181 |
Q |
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| T |
24614216 |
aaagagaatgtgaagaatgtaatgttttactgttgaatga |
24614177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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