View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_17 (Length: 354)
Name: NF19216_low_17
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 2425673 - 2425324
Alignment:
| Q |
7 |
tttctgttccaataaattttattgttttaactgtcacgttttcaacaccaagctcttggaattccttcgccaaacttccaatactgcacaacaaacattg |
106 |
Q |
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| T |
2425673 |
tttctgttccaataaattttattgttttaactgtcacgttttcaacaccaagctcttgaaattccttcgccaaacttccaatactgcacaacaaacattg |
2425574 |
T |
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| Q |
107 |
aattgaaccaatgttaaaaccatttaca---------------------aaacacaatttgtatcatctggaagacnnnnnnnnngcagtttccaaatta |
185 |
Q |
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| T |
2425573 |
aattgaaccaatgttaaaaccatttacacacattactcatttcattacaaaacacaatttgtatcatctgtaagacaaaaacaa-gcagtttccaaa--- |
2425478 |
T |
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| Q |
186 |
aaagatcattaccttatgccatgacctggtccacatgctatgctttctatccacaaatttgttgttccagacccaatcgagatgcaatcatcacctgttt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
2425477 |
-aagatcattaccttatgccatgacctggtccacatgctatgctttctatccacaaatttgttgttccagacccaatcgagatgcaatcatcgccggttt |
2425379 |
T |
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| Q |
286 |
ctatgttggagttgaggatggtgacacttgatgagagttgagcatgaataccatc |
340 |
Q |
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| T |
2425378 |
ctatgttggagttgaggatggtgacacttgatgagagttgaacatgaataccatc |
2425324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 32522909 - 32523024
Alignment:
| Q |
196 |
accttatgccatgacctggtccacatgctatgctttctatccacaaatttgttgttccagacccaatcgagatgcaatcatcacctgtttctatgttgga |
295 |
Q |
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||||||| ||||| || ||||||||||| ||| |||| ||||||||||| |||| |||| ||||| ||||| |||||||| || ||| || ||||| |
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| T |
32522909 |
accttattccatgtcccggtccacatgcaatgttttcaatccacaaattacttgtaccagggccaattgagatacaatcatcgccggttcgaattttgga |
32523008 |
T |
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| Q |
296 |
gttgaggatggtgaca |
311 |
Q |
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| T |
32523009 |
gttgacgatggtgaca |
32523024 |
T |
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