View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19216_low_18 (Length: 348)

Name: NF19216_low_18
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19216_low_18
NF19216_low_18
[»] chr5 (21 HSPs)
chr5 (19-348)||(17419208-17419537)
chr5 (19-149)||(30243689-30243819)
chr5 (19-184)||(30481951-30482118)
chr5 (29-156)||(30398663-30398790)
chr5 (19-161)||(30339842-30339984)
chr5 (19-151)||(30748297-30748429)
chr5 (19-184)||(29870805-29870972)
chr5 (19-156)||(30434471-30434608)
chr5 (19-172)||(29851932-29852085)
chr5 (29-156)||(30058937-30059064)
chr5 (43-148)||(29710311-29710416)
chr5 (18-143)||(30202743-30202868)
chr5 (40-144)||(30246138-30246242)
chr5 (113-161)||(30678644-30678692)
chr5 (34-148)||(30473963-30474077)
chr5 (19-111)||(4380358-4380450)
chr5 (79-145)||(17981534-17981600)
chr5 (82-144)||(30397937-30397999)
chr5 (32-144)||(30205102-30205214)
chr5 (294-341)||(30678918-30678965)
chr5 (289-326)||(29870619-29870656)
[»] chr7 (2 HSPs)
chr7 (19-154)||(26705914-26706049)
chr7 (234-320)||(26705690-26705782)
[»] chr4 (3 HSPs)
chr4 (17-149)||(20298062-20298194)
chr4 (19-148)||(20303946-20304074)
chr4 (79-153)||(13615444-13615518)
[»] chr1 (1 HSPs)
chr1 (91-154)||(7097997-7098060)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 17419208 - 17419537
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  17419208 atgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgcaaggagggaaccggggag 17419307  T
Q  119 gattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttacaggtaggatctctatttccccttcttacatgtac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17419308 gattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttacaggtagaatctctatttccccttcttacatgtac 17419407  T
Q  219 gatgcaattgacttgatttttattcaaaaatctttatattttctcattgttgacttcttcagaaagagcaccagagtacatgaaagatattttactgctc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17419408 gatgcaattgacttgatttttattcaaaaatctttatattttctcgttgttgacttcttcagaaagagcactagagtacatgaaagatattttactgctc 17419507  T
Q  319 aacctaaggagaaattttctaatagttgtg 348  Q
    |||| |||||||||||||||||||||||||    
T  17419508 aaccaaaggagaaattttctaatagttgtg 17419537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 30243689 - 30243819
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  |||||||||||||||||||||||||||||| || |||| |||||| | |  |||||||||||||| |||||||| || ||||| ||||||    
T  30243689 atgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaacaggggag 30243788  T
Q  119 gattgggacaagatagctcatattccaaaaa 149  Q
    |||||||||||||||||||||||||||||||    
T  30243789 gattgggacaagatagctcatattccaaaaa 30243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 30482118 - 30481951
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||  ||||  || | ||||||||||||||| |||||||| || |||||  |||||    
T  30482118 atgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaacatgggag 30482019  T
Q  119 gattgggacaagatagctcatattccaaaaataaagttaa---agtattaagaagcaagagacgtttac 184  Q
    ||||||||||||||||||||||||||||||||| |||| |   || |||||||||| ||||||||||||    
T  30482018 gattgggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagc-agagacgtttac 30481951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 30398790 - 30398663
Alignment:
Q  29 gagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggaca 128  Q
    ||||||||| |||||||||||||||||||| ||||||  ||  |||| | |||||||||| |||| |||||||| || ||||| ||||||||||||||||    
T  30398790 gagggtattagacacctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggaca 30398691  T
Q  129 agatagctcatattccaaaaataaagtt 156  Q
    ||||||||||||||||||||||| ||||    
T  30398690 agatagctcatattccaaaaatacagtt 30398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 30339842 - 30339984
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||  ||   | | | ||||||||||||||| |||||||| || ||||| ||||||    
T  30339842 atgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaacaggggag 30339941  T
Q  119 gattgggacaagatagctcatattccaaaaataaagttaaagt 161  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  30339942 gattgggacaagatagctcatattccaaatatacagtttaagt 30339984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 30748429 - 30748297
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||  | ||   ||| | ||||||||||||||| |||||||| || |||||  |||||    
T  30748429 atgcttgccggagggtattcgacacctcacttctcttgagcttcttgatatcattgattgcccaacattagaggaacgatgcaaagagggaacatgggag 30748330  T
Q  119 gattgggacaagatagctcatattccaaaaata 151  Q
    |||||||||||||||||||||||||||||||||    
T  30748329 gattgggacaagatagctcatattccaaaaata 30748297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 29870972 - 29870805
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  ||||||||||||||||||||||| |||||| |||||   ||| | |  | ||||||||||||||| |||||||| || ||||| ||||||    
T  29870972 atgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaacaggggag 29870873  T
Q  119 gattgggacaagatagctcatattccaaaaataaagttaa---agtattaagaagcaagagacgtttac 184  Q
    |||||||||||||||||||||||||||| |||| |||| |   || |||||||||| ||||||||||||    
T  29870872 gattgggacaagatagctcatattccaataatacagtttaccgaggattaagaagc-agagacgtttac 29870805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 30434608 - 30434471
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||   ||   ||| | |||||||||| |||| |||||||| || ||||| ||||||    
T  30434608 atgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaacaggggag 30434509  T
Q  119 gattgggacaagatagctcatattccaaaaataaagtt 156  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  30434508 gattgggacaagatagctcatattccaagaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 29852085 - 29851932
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||   ||| |  | | ||||||||||||||| |||||||| |  |||||  | |||    
T  29852085 atgcttgccggagggtattggacacctcacttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaaagtgggaacatgtgag 29851986  T
Q  119 gattgggacaagatagctcatattccaaaaataaagttaaagtattaagaagca 172  Q
    ||||||||||||||| ||||||||||||| ||| |||| || ||||||||||||    
T  29851985 gattgggacaagatatctcatattccaaatatacagtttaactattaagaagca 29851932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 30059064 - 30058937
Alignment:
Q  29 gagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggaca 128  Q
    |||||||||||||||||||||||||||||| ||||||  ||   ||  | || ||||||| |||| ||||||||| |  |||| ||||||||||||||||    
T  30059064 gagggtattcgacacctcacttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaagaagcgaacaggggaggattgggaca 30058965  T
Q  129 agatagctcatattccaaaaataaagtt 156  Q
    ||||| ||||||||||||||||| ||||    
T  30058964 agatatctcatattccaaaaatacagtt 30058937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 29710311 - 29710416
Alignment:
Q  43 cctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatatt 142  Q
    |||||||||||||||| ||||| |  ||||| | | | ||||||||||||| ||||||||||| ||| |  ||||||||| |||||||||||| ||| ||    
T  29710311 cctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagggagcaagggaggattaggacaagatagcgcatgtt 29710410  T
Q  143 ccaaaa 148  Q
    ||||||    
T  29710411 ccaaaa 29710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 30202868 - 30202743
Alignment:
Q  18 aatgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccgggga 117  Q
    ||||||||||||| |||||| ||||||||||||| ||||| || ||||  ||||  |  | ||||| |||  |||| ||||||||||| ||||| |||||    
T  30202868 aatgcttgctagaaggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaaggagggaacagggga 30202769  T
Q  118 ggattgggacaagatagctcatattc 143  Q
    | | |||||||||||||| |||||||    
T  30202768 gaactgggacaagatagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 30246138 - 30246242
Alignment:
Q  40 acacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcat 139  Q
    ||||||||||||||| ||| ||||||| ||| || | || ||||||||| |||||||||||||| | |  ||  |||||||| ||||||||||| |||||    
T  30246138 acacctcacttctctcgaggttctgaatattcatcattctccaacattaaaggagcgatgcaagaaggagacatgggaggatcgggacaagatatctcat 30246237  T
Q  140 attcc 144  Q
    |||||    
T  30246238 attcc 30246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 30678644 - 30678692
Alignment:
Q  113 ggggaggattgggacaagatagctcatattccaaaaataaagttaaagt 161  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  30678644 ggggaggattgggacaagatagctcatattccaaaaatacagtttaagt 30678692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 30474077 - 30473963
Alignment:
Q  34 tattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagata 133  Q
    ||||| |||||||||||| ||||||||| |||| |||   |  | |||||||||| |||||||||  ||| | |||||||| ||||| ||||||||||||    
T  30474077 tattcaacacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagata 30473978  T
Q  134 gctcatattccaaaa 148  Q
    || || |||||||||    
T  30473977 gcgcacattccaaaa 30473963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 4380450 - 4380358
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaac 111  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||  ||   ||  | ||||||||||||||| |||||||| || |||||    
T  4380450 atgcttgccggagggtattcgacacctcacttctcttgaggttctgagaatcattggttgcccaacattagaggaacgatgcaaagagggaac 4380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 17981600 - 17981534
Alignment:
Q  79 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattcca 145  Q
    ||||||||| ||| |||||||||| || |||||||| || || |||||||||||||| |||||||||    
T  17981600 cccaacattggagaagcgatgcaatgagggaaccggagaagactgggacaagatagcccatattcca 17981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 30397999 - 30397937
Alignment:
Q  82 aacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattcc 144  Q
    |||||||||||||| ||||||||||||||| || ||||| ||| |||||||||| | ||||||    
T  30397999 aacattagaggagcaatgcaaggacggaacaggagaggactggaacaagatagcacgtattcc 30397937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 30205214 - 30205102
Alignment:
Q  32 ggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaaga 131  Q
    ||||||||||| ||||||||||| ||| ||||||  |||  ||  |  |||||| |||| |||||||||||||| ||||| || ||||| ||| ||||||    
T  30205214 ggtattcgacatctcacttctctggagcttctgacaattcgtggttgtccaacactagaagagcgatgcaaggagggaacaggagaggactggtacaaga 30205115  T
Q  132 tagctcatattcc 144  Q
    || | ||||||||    
T  30205114 tatcgcatattcc 30205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 30678918 - 30678965
Alignment:
Q  294 gtacatgaaagatattttactgctcaacctaaggagaaattttctaat 341  Q
    ||||||||||||||||||||||||||||||| ||| || | |||||||    
T  30678918 gtacatgaaagatattttactgctcaacctacggacaattgttctaat 30678965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 29870656 - 29870619
Alignment:
Q  289 ccagagtacatgaaagatattttactgctcaacctaag 326  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  29870656 ccagagtacatgaaagatattttactgttcatcctaag 29870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 26706049 - 26705914
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||  ||||     | ||||||||||||||| |||||||| || ||||| ||||||    
T  26706049 atgcttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggag 26705950  T
Q  119 gattgggacaagatagctcatattccaaaaataaag 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  26705949 gattgggacaagatagctcatattccaaaaataaag 26705914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 26705782 - 26705690
Alignment:
Q  234 atttttattcaaaaatctttatatt--ttctcattgttgacttcttcagaaagagcaccaga----gtacatgaaagatattttactgctcaa 320  Q
    ||||| |||||||||||||| |||   |||||||| ||| ||||||||||||||||   |||    |||||||||||||||||||||| ||||    
T  26705782 attttaattcaaaaatctttttatacattctcattcttggcttcttcagaaagagctgtagagtacgtacatgaaagatattttactgttcaa 26705690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 20298062 - 20298194
Alignment:
Q  17 caatgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccgggg 116  Q
    |||||||||| ||| || |||| ||||||||||||||||||| ||||||  ||   | | | ||| |||||| ||   |||||||| || ||||| ||||    
T  20298062 caatgcttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacagggg 20298161  T
Q  117 aggattgggacaagatagctcatattccaaaaa 149  Q
    |||||||||||||||||||||||||||||||||    
T  20298162 aggattgggacaagatagctcatattccaaaaa 20298194  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 20303946 - 20304074
Alignment:
Q  19 atgcttgctagagggtattcgacacctcacttctcttgagtttctgaacatttatgactccccaacattagaggagcgatgcaaggacggaaccggggag 118  Q
    ||||||||  || |||||||||  ||||||||| |||||| || |||  |||||||| | |||||||||| |||| || ||||||   ||||| || |||    
T  20303946 atgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaacaggcgag 20304045  T
Q  119 gattgggacaagatagctcatattccaaaa 148  Q
    |||||| |||||||||| ||||||||||||    
T  20304046 gattgg-acaagatagcgcatattccaaaa 20304074  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 13615518 - 13615444
Alignment:
Q  79 cccaacattagaggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaa 153  Q
    |||||||||  || ||||||||||||| |||||  |||| || |||||||||||||| |||||||||||| ||||    
T  13615518 cccaacattgaagaagcgatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaactaaa 13615444  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 7098060 - 7097997
Alignment:
Q  91 ggagcgatgcaaggacggaaccggggaggattgggacaagatagctcatattccaaaaataaag 154  Q
    ||||||||||||||| ||||| ||||| || |||||||||||||| |||||||||||| |||||    
T  7098060 ggagcgatgcaaggagggaacaggggaagactgggacaagatagcccatattccaaaactaaag 7097997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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