View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19216_low_19 (Length: 327)
Name: NF19216_low_19
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 3061368 - 3061671
Alignment:
| Q |
7 |
gcagcacagatgaagtggaaattttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggtt |
106 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3061368 |
gcagcacaaatgaagtggaaaatttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggtt |
3061467 |
T |
|
| Q |
107 |
ttttggtaaaagggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagcca |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3061468 |
ttttggtgaaagggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagcca |
3061567 |
T |
|
| Q |
207 |
ctttcttaatcaaggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtttctttgtatgttgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3061568 |
ctttcttaatcaaggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtctctttgtatgttgat |
3061667 |
T |
|
| Q |
307 |
gact |
310 |
Q |
| |
|
|||| |
|
|
| T |
3061668 |
gact |
3061671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 7160663 - 7160817
Alignment:
| Q |
34 |
catttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaagggagggaagacaagg |
133 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||| || || ||||||||||||| |||||||| |||||| | || ||| |||||||| | |
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|
| T |
7160663 |
catttggatgtcaaatcggcattcttaaatggaatcctggaggaggaaatttatgttgaacaacctgccggttttattgttgcaggtcatgaagacaatg |
7160762 |
T |
|
| Q |
134 |
tgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggta |
188 |
Q |
| |
|
| |||| |||| ||||||| |||||||||||||||||||| |||||||| ||||| |
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|
| T |
7160763 |
tttataggcttcataaagccttgtatgggctgaaacaggcgcctagagcctggta |
7160817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 30048306 - 30048472
Alignment:
| Q |
34 |
catttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaagggagggaagacaagg |
133 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||| || || ||||||||||||| ||||||||||||||| | || ||| ||||||| | |
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| T |
30048306 |
catttggatgtcaaatcggcattcttaaatggaatcctggaggaggaaatttatgttgaacaacctgctggttttattgttgcaggtcatgaagacagtg |
30048405 |
T |
|
| Q |
134 |
tgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattga |
200 |
Q |
| |
|
| |||| |||| | ||||| ||||||||||| |||||||| |||||||| ||||| |||| |||||| |
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|
| T |
30048406 |
tttataggcttcacaaagccttgtatgggctaaaacaggcgcctagagcctggtacagcagaattga |
30048472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 17440832 - 17440529
Alignment:
| Q |
7 |
gcagcacagatgaagtggaaattttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggtt |
106 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17440832 |
gcagcacaaatgaagtggaaaatttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggtt |
17440733 |
T |
|
| Q |
107 |
ttttggtaaaagggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagcca |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17440732 |
ttttggtgaaagggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagcca |
17440633 |
T |
|
| Q |
207 |
ctttcttaatcaaggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtttctttgtatgttgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17440632 |
ctttcttaatcaaggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtctctttgtatgttgat |
17440533 |
T |
|
| Q |
307 |
gact |
310 |
Q |
| |
|
|||| |
|
|
| T |
17440532 |
gact |
17440529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 3944560 - 3944714
Alignment:
| Q |
34 |
catttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaagggagggaagacaagg |
133 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||| || || ||||||||||||| ||||||||||||||| | || ||| ||||||| | |
|
|
| T |
3944560 |
catttggatgtcaaatcggcattcttaaatggaatcctggaggaggaaatttatgttgaacaacctgctggttttattgttgcaggttatgaagacagtg |
3944659 |
T |
|
| Q |
134 |
tgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggta |
188 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
3944660 |
tgtataggcttcataaagccttgtatgggctgaaacaggcgcctagagcctggta |
3944714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 4876011 - 4876314
Alignment:
| Q |
7 |
gcagcacagatgaagtggaaattttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggtt |
106 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876011 |
gcagcacaaatgaagtggaaaatttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggtt |
4876110 |
T |
|
| Q |
107 |
ttttggtaaaagggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagcca |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876111 |
ttttggtgaaagggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagcca |
4876210 |
T |
|
| Q |
207 |
ctttcttaatcaaggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtttctttgtatgttgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4876211 |
ctttcttaatcaaggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtctctttgtatgttgat |
4876310 |
T |
|
| Q |
307 |
gact |
310 |
Q |
| |
|
|||| |
|
|
| T |
4876311 |
gact |
4876314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 30188640 - 30188930
Alignment:
| Q |
19 |
aagtggaaattttggcatttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaag |
118 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30188640 |
aagtggaaaatttggcatttagatttcaaatcagcattcttaaatggaaatcttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaag |
30188739 |
T |
|
| Q |
119 |
ggagggaagacaaggtgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattgatagccactttcttaatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||| |
|
|
| T |
30188740 |
ggagggaagacaaggtgtataagcttcataaagctttgtatgggctgaaacaggcccctagagcttggtacaacaaaattaatatccactttcttaatca |
30188839 |
T |
|
| Q |
219 |
aggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagattgttggatggtggttccttaattgtttctttgtatgttgatgac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30188840 |
aggattcaaaaggagtgaaaatgatgcaactctttatgtaagaagcttgttggatggtggttccttaattgtctctttgtatgttgatgac |
30188930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 17533190 - 17533138
Alignment:
| Q |
148 |
aaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattga |
200 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| | ||||||||| ||||| |
|
|
| T |
17533190 |
aaagctttgtatgggctgaaacaagcaccaagagcgttgtatagcaatattga |
17533138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 39950870 - 39950704
Alignment:
| Q |
34 |
catttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaagggagggaagacaagg |
133 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||| || || ||||||||||||| ||||||||||||||| | || ||| ||||||| | |
|
|
| T |
39950870 |
catttggatgtcaaatcggcattcttaaatggaatcctggaggaggaaatttatgttgaacaacctgctggttttattgttgcaggtcatgaagacagtg |
39950771 |
T |
|
| Q |
134 |
tgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattga |
200 |
Q |
| |
|
| |||| |||| | ||||| ||||||||||| |||||||| |||||||| ||||| |||| |||||| |
|
|
| T |
39950770 |
tttataggcttcacaaagccttgtatgggctaaaacaggcgcctagagcctggtacagcagaattga |
39950704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 197709 - 197543
Alignment:
| Q |
34 |
catttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaagggagggaagacaagg |
133 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||| || || ||||||||||||| ||||||||||||||| | || ||| ||||||| | |
|
|
| T |
197709 |
catttggatgtcaaatcggcattcttaaatggaatcctggaggaggaaatttatgttgaacaacctgctggttttattgttgcaggtcatgaagacagtg |
197610 |
T |
|
| Q |
134 |
tgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattga |
200 |
Q |
| |
|
| |||| |||| | ||||| ||||||||||| |||||||| |||||||| ||||| |||| |||||| |
|
|
| T |
197609 |
tttataggcttcacaaagccttgtatgggctaaaacaggcgcctagagcctggtacagcagaattga |
197543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 22364188 - 22364354
Alignment:
| Q |
34 |
catttagatgtcaaatcagcattcttaaatggtaaccttgatgaagaaatttatgttgctcaacctgctggttttttggtaaaagggagggaagacaagg |
133 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | ||| || || ||||||||||||| |||||||||| |||| | || || ||||||| | |
|
|
| T |
22364188 |
catttggatgtcaaatcggcattcttaaatggaatcctggaggaggaaatttatgttgaacaacctgctgattttattgttgcagatcatgaagacagtg |
22364287 |
T |
|
| Q |
134 |
tgtataagcttaataaagctttgtatgggctgaaacaggcccctagagcttggtatagcaaaattga |
200 |
Q |
| |
|
| |||| |||| | ||||| |||||||||||||||||||| |||||||| ||||| |||| |||||| |
|
|
| T |
22364288 |
tttataggcttcacaaagccttgtatgggctgaaacaggcgcctagagcctggtacagcagaattga |
22364354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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