View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_24 (Length: 300)
Name: NF19216_low_24
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 21621414 - 21621144
Alignment:
| Q |
20 |
tattcttcttaggatgaaaccttctttttattttatgtaaaccaattcaattcaatcaacatatttagaatataaatgggtcttttgacaaataataatg |
119 |
Q |
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| T |
21621414 |
tattcttcttaggatgaaaccttctttttattttatgtaaaccaattcaattcaatcagcatatttataatataaatgggtcttttgacaaaaaataatg |
21621315 |
T |
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| Q |
120 |
ttttgtcgtatgattcatattttgactttaaattttaaac-nnnnnnnnaaaatccaaaagttaatcaggtgactaaaatcgtatgattacatacatgaa |
218 |
Q |
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| T |
21621314 |
ttttgtcgtatgattcatattttgactttaaattttaaacttttttttttaaattcaaaagttaatcaggtgactaaaatcgtatgattacatacatgaa |
21621215 |
T |
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| Q |
219 |
tctacaagtatctcaaaagtgtcaagtttaaggtctatctatataaaactcatgtaggtatctatcttcat |
289 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
21621214 |
tctacaagtatctcaaaagtgtcaattttagggtctatctatataaaactcatgtaagtatctatcttcat |
21621144 |
T |
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