View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_25 (Length: 294)
Name: NF19216_low_25
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 50233764 - 50233501
Alignment:
| Q |
20 |
aagaggactttgcatgttctaatcatatccataagttgcattgattctactaatcataggtctactcggctatatattacacgatcctacttcaaaacat |
119 |
Q |
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| T |
50233764 |
aagaggactttgcatgttctaatcatatccataagttgcattgattctactaatcataggtctactcggctatatattacacgatcctacttcaaaacat |
50233665 |
T |
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| Q |
120 |
attgctgttaatctaatggaaattttttcctggatttgaatacaagagatagaaaagaatactaggttatgaatcttggcttattctctcattggtcaag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50233664 |
attgctgttaatctaatggaaattttttcctggatttgaatacaagagatagaaaagaatactaggttatgaatcttggattattctctcattggtcaag |
50233565 |
T |
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| Q |
220 |
gccaacttatagcatgtgcaaagtaagctaccgcgcatcacccaaaaaatgtgtcccaatctct |
283 |
Q |
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| T |
50233564 |
gccaacttatagcatgtgcaaactaggctaccgcgcatcacccaaaaaatttgccacaatctct |
50233501 |
T |
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