View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_27 (Length: 283)
Name: NF19216_low_27
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 8028192 - 8028321
Alignment:
| Q |
139 |
gacaaactaaccttctctaattattatggaataataaa-tattaagatattagttagcattttattttttacttcaatcctttaatattacaaaaccaaa |
237 |
Q |
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| T |
8028192 |
gacaaactaaccttctctaattattatggaataataaaatattaagatattagttggcattttattttttacttcaatcctttaatattacaaaaccaaa |
8028291 |
T |
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| Q |
238 |
ctattaccactgaatttaacacctaaaaaa |
267 |
Q |
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| T |
8028292 |
ctattaccactgaatttaacacctaaaaaa |
8028321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 8028037 - 8028092
Alignment:
| Q |
22 |
aagaaacatcggtgcaatttttgtttgatatactttctcctaacttaattataagc |
77 |
Q |
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| T |
8028037 |
aagaaacatcggtgcaatttttgtttgatatactttctcctaacttaattataagc |
8028092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 8028109 - 8028144
Alignment:
| Q |
93 |
ctaataacgataattaaattaatttaattttctccg |
128 |
Q |
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| T |
8028109 |
ctaataacgataattaaattcatttaattttctccg |
8028144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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