View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_29 (Length: 272)
Name: NF19216_low_29
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 45391248 - 45391368
Alignment:
| Q |
14 |
aaatataaccaatgaaaaatacaatgatttaagaataatnnnnnnnngagttatctttcaatacctcccccattggtgttactctgctgctgagataagc |
113 |
Q |
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| T |
45391248 |
aaatataaccaatgaaaaattcaatgatttaagaataataaaaaaaagagttatctttcaatacctcccccattggtgttactctgctgctgagataagc |
45391347 |
T |
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| Q |
114 |
ttcgaagagggactctgcttt |
134 |
Q |
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| T |
45391348 |
ttcgaagagggactctgcttt |
45391368 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 45391400 - 45391471
Alignment:
| Q |
155 |
gcactactacaatacacttcaaattcaataggtatatgatatgataaaggctatttataatctcattttcag |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391400 |
gcactactacaatacacttcaaattcaataggtatatgatatgataaaggctatttataatctcattttcag |
45391471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 734856 - 734971
Alignment:
| Q |
14 |
aaatataaccaatgaaaaatacaatgatttaagaataatnnnnnnnngagttatctttcaatacctcccccattggtgttactctgctgctgagataagc |
113 |
Q |
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|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734856 |
aaatataaccaatgaaaatttcaatgatttaagaataataaaaaaaagagttatctttcaatacctcccccattggtgttactctgctgctgagataagc |
734955 |
T |
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| Q |
114 |
ttcgaagagggactct |
129 |
Q |
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|||||||||||||||| |
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| T |
734956 |
ttcgaagagggactct |
734971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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