View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_30 (Length: 269)
Name: NF19216_low_30
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_30 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 269
Target Start/End: Original strand, 3061134 - 3061399
Alignment:
| Q |
4 |
gagatggacatcatcgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
103 |
Q |
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| T |
3061134 |
gagatggacaacattgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
3061233 |
T |
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| Q |
104 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
203 |
Q |
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| T |
3061234 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
3061333 |
T |
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| Q |
204 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaattttggcattt |
269 |
Q |
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| T |
3061334 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaaatttggcattt |
3061399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 269
Target Start/End: Complemental strand, 17441066 - 17440801
Alignment:
| Q |
4 |
gagatggacatcatcgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
103 |
Q |
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| T |
17441066 |
gagatggacaacattgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
17440967 |
T |
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| Q |
104 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
203 |
Q |
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| T |
17440966 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
17440867 |
T |
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| Q |
204 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaattttggcattt |
269 |
Q |
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| T |
17440866 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaaatttggcattt |
17440801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 269
Target Start/End: Original strand, 4875777 - 4876042
Alignment:
| Q |
4 |
gagatggacatcatcgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
103 |
Q |
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| T |
4875777 |
gagatggacaacattgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
4875876 |
T |
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| Q |
104 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
203 |
Q |
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| T |
4875877 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
4875976 |
T |
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| Q |
204 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaattttggcattt |
269 |
Q |
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| T |
4875977 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaaatttggcattt |
4876042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 269
Target Start/End: Original strand, 30188394 - 30188659
Alignment:
| Q |
4 |
gagatggacatcatcgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgaaatgggtctatagggtcaagatga |
103 |
Q |
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| T |
30188394 |
gagatggacaacattgaaaagaacaagacatggcagctggttgacaagcctagagacaagaatgtcataggagtgcaatgggtctatagggtaaagatga |
30188493 |
T |
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| Q |
104 |
acccagatggatccatcaacaaatacaaggccagacttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatttgcaccggtagc |
203 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
30188494 |
acccaaatggatccatcaacaaatacaaggccaagcttgttgtcaagggctatgttcaacaatccgggattgactacacagaaacatatccatcggtagc |
30188593 |
T |
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| Q |
204 |
aagaatggatactattcgaattcttgtagcgttggcagcacaaatgaagtggaaattttggcattt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| |
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| T |
30188594 |
tagaatggatactattcgaattcttgtagcgttggcagtacaaataaagtggaaaatttggcattt |
30188659 |
T |
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