View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_32 (Length: 260)
Name: NF19216_low_32
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 23357678 - 23357445
Alignment:
| Q |
11 |
catagggagcaaactagaactgatgatattgatttgaaatcagagagtgtgaccctcttcaaagttttnnnnnnnnnnnnnnnnnncaaactattgcgat |
110 |
Q |
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| T |
23357678 |
catagcgagtaaactagacatgatgatattgatttgaaacttgagagtgtgaccctcttcaaaattttaaaaaaataaaaaataaacaaactattgcgac |
23357579 |
T |
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| Q |
111 |
aaaataccgtgcagcaagccggaggtaacaaacttttgtttaatttgatttttgtatgcccttgtctcttctaaaaatattaagggatattaatcacttt |
210 |
Q |
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| T |
23357578 |
aaaataccgtgcagcaaacgggaggtaacaaacttttgtttaatttgatttttgtatgctcttgtctcttctaaaaatattaagggatattaatcacttt |
23357479 |
T |
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| Q |
211 |
gatcgctgaatgtgtaatgagtagtcacaataat |
244 |
Q |
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| T |
23357478 |
agtcgctgaatgtgtaatgagtagtcacaataat |
23357445 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 17753252 - 17753302
Alignment:
| Q |
192 |
aagggatattaatcactttgatcgctgaatgtgtaatgagtagtcacaata |
242 |
Q |
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| T |
17753252 |
aagggataatagtcattttgatctctgaatatgtaatgagtagtcacaata |
17753302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 45679510 - 45679550
Alignment:
| Q |
204 |
tcactttgatcgctgaatgtgtaatgagtagtcacaataat |
244 |
Q |
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| T |
45679510 |
tcactttggtctctgaatgtgtaacgagtagtcacaataat |
45679550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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