View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19216_low_38 (Length: 249)

Name: NF19216_low_38
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19216_low_38
NF19216_low_38
[»] chr5 (5 HSPs)
chr5 (1-249)||(32670548-32670792)
chr5 (43-130)||(2331950-2332037)
chr5 (78-157)||(25627056-25627135)
chr5 (43-148)||(16436626-16436730)
chr5 (124-156)||(21589288-21589320)
[»] chr6 (2 HSPs)
chr6 (43-117)||(6608078-6608152)
chr6 (108-155)||(6758450-6758497)
[»] scaffold0072 (1 HSPs)
scaffold0072 (43-120)||(16587-16664)
[»] chr3 (8 HSPs)
chr3 (43-117)||(33464502-33464576)
chr3 (78-156)||(27093359-27093437)
chr3 (77-157)||(14339609-14339689)
chr3 (106-156)||(24459990-24460040)
chr3 (108-156)||(2597248-2597296)
chr3 (124-156)||(8051214-8051246)
chr3 (124-156)||(10499153-10499185)
chr3 (43-71)||(49452958-49452986)
[»] chr2 (6 HSPs)
chr2 (43-117)||(2285264-2285338)
chr2 (78-157)||(11062359-11062438)
chr2 (77-159)||(23052520-23052602)
chr2 (43-156)||(1435064-1435177)
chr2 (43-120)||(1156469-1156546)
chr2 (124-156)||(37480075-37480107)
[»] scaffold0172 (1 HSPs)
scaffold0172 (43-145)||(15739-15842)
[»] chr7 (7 HSPs)
chr7 (50-157)||(15137552-15137660)
chr7 (77-157)||(43590906-43590986)
chr7 (43-148)||(41519227-41519332)
chr7 (108-157)||(45559199-45559248)
chr7 (43-71)||(20335793-20335821)
chr7 (124-156)||(30579335-30579367)
chr7 (124-156)||(41487362-41487394)
[»] chr8 (6 HSPs)
chr8 (78-160)||(35287712-35287794)
chr8 (42-117)||(37816535-37816611)
chr8 (43-156)||(44780076-44780190)
chr8 (43-71)||(27979243-27979271)
chr8 (43-71)||(28036512-28036540)
chr8 (50-145)||(43594287-43594383)
[»] chr4 (5 HSPs)
chr4 (124-157)||(9241069-9241102)
chr4 (124-157)||(19238621-19238654)
chr4 (43-71)||(9669424-9669452)
chr4 (124-156)||(51250566-51250598)
chr4 (124-156)||(55427244-55427276)
[»] scaffold0032 (1 HSPs)
scaffold0032 (108-156)||(112282-112330)
[»] chr1 (4 HSPs)
chr1 (124-156)||(19528371-19528403)
chr1 (78-154)||(33700771-33700847)
chr1 (124-156)||(40257399-40257431)
chr1 (77-157)||(52116778-52116858)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32670548 - 32670792
Alignment:
Q  1 acatgcgaaagaaacacaaaattgcaactataacnnnnnnnaaagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattga 100  Q
    ||||||||| |||||||||||||||||||| |||       ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32670548 acatgcgaatgaaacacaaaattgcaactacaactttttttaaagaagctaaattagcccatccaaattgacacatggagaatcaaacatgagacattga 32670647  T
Q  101 cgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggttacaagaagaaaaatagttctaacaacaacttcatcaacaaacat 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  32670648 cgataaacacactccaaaatcctaagccaataccaccaggccaacccaggtgggttacaagaagaaaaatagttct---aacaacttcatcaacaaacat 32670744  T
Q  201 gattcaagtgttagtatgtttattagttttgtttcattattttactgta 249  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32670745 gattcaagtgttagtatg-ttattagttttgtttcattattttactgta 32670792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 2331950 - 2332037
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaa 130  Q
    |||||||||||||||||||  |||||||| | | ||||||||||||||||||| ||||  | ||||||||||||| || | |||||||    
T  2331950 aagaagttaaattagcccactcaaattgacatagggagaatcaaacatgagaccttgagaaaaaacacactccaagatcccaagccaa 2332037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 25627135 - 25627056
Alignment:
Q  78 gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggtta 157  Q
    ||||||| ||| |||||| |||| ||  | |||||||| || ||| ||||||||||||| ||||||||||| ||||||||    
T  25627135 gagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtta 25627056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 16436730 - 16436626
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggcc 142  Q
    |||||||||||||||| ||  |||||||||||   || |||| |||||||||| |||| ||  | |||||||| || | | ||||||||||||| |||||    
T  16436730 aagaagttaaattagctcactcaaattgatactgtgaaaatcgaacatgagaccttgaggaggagcacactcc-aagtcccaagccaataccactaggcc 16436632  T
Q  143 aaccca 148  Q
    ||||||    
T  16436631 aaccca 16436626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 21589320 - 21589288
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  21589320 aagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 6608078 - 6608152
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaa 117  Q
    |||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||  | |||||||||||||    
T  6608078 aagaagttaaattagcccactcaaattgatatagggagaatcaaacatgagacattgagaagaaacacactccaa 6608152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 6758450 - 6758497
Alignment:
Q  108 cacactccaaaattctaagccaataccaccaggccaacccaggtgggt 155  Q
    |||||||| |||| |||||||||||||||||||||||| || ||||||    
T  6758450 cacactcccaaatcctaagccaataccaccaggccaacacaagtgggt 6758497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 16664 - 16587
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaaaat 120  Q
    |||||||||||||||||||  |||||||||| | ||||||||||||||||||| ||||  | ||||||||||||||||    
T  16664 aagaagttaaattagcccactcaaattgatatagggagaatcaaacatgagaccttgagaagaaacacactccaaaat 16587  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 33464576 - 33464502
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaa 117  Q
    |||||||||||||||||||  |||||||||| | ||||||||||||||||||| ||||  | |||||||||||||    
T  33464576 aagaagttaaattagcccactcaaattgatatagggagaatcaaacatgagaccttgagaagaaacacactccaa 33464502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 27093359 - 27093437
Alignment:
Q  78 gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||| |||||| |||| ||  | |||||||| || ||| ||||||||||||| ||||||||||| |||||||    
T  27093359 gagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 27093437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 14339689 - 14339609
Alignment:
Q  77 ggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggtta 157  Q
    |||||||| ||| ||||||||||| ||  | |||||||| |||| | ||||||||||||||||||||| |||  |||||||    
T  14339689 ggagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaactgggtta 14339609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 24460040 - 24459990
Alignment:
Q  106 aacacactccaaaattctaagccaataccaccaggccaacccaggtgggtt 156  Q
    |||||| |||||| | | ||||||||||||||||||||||||| |||||||    
T  24460040 aacacattccaaagtaccaagccaataccaccaggccaacccaagtgggtt 24459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 2597248 - 2597296
Alignment:
Q  108 cacactccaaaattctaagccaataccaccaggccaacccaggtgggtt 156  Q
    |||||||| |||| | |||||||||||||||| |||||||| |||||||    
T  2597248 cacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 8051246 - 8051214
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  8051246 aagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 10499153 - 10499185
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  10499153 aagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 49452986 - 49452958
Alignment:
Q  43 aagaagttaaattagcccatccaaattga 71  Q
    |||||||||||||||||||||||||||||    
T  49452986 aagaagttaaattagcccatccaaattga 49452958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 2285264 - 2285338
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaa 117  Q
    |||||||||||||||||||  |||||||||| | ||||||||||||||||||| ||||  | |||||||||||||    
T  2285264 aagaagttaaattagcccaatcaaattgatatagggagaatcaaacatgagaccttgagaaaaaacacactccaa 2285338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 11062438 - 11062359
Alignment:
Q  78 gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggtta 157  Q
    ||||||||||| |||||| |||| || || |||||||| || ||| ||||||||| ||| ||||||||||| ||||||||    
T  11062438 gagaatcaaacctgagaccttgaggagaagcacactcccaagttccaagccaatatcactaggccaacccaagtgggtta 11062359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 23052520 - 23052602
Alignment:
Q  77 ggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggttaca 159  Q
    |||||||| ||| |||||| |||| || || |||||||| || | | ||||||||||||||||||||||| | ||||||||||    
T  23052520 ggagaatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggccaacctaagtgggttaca 23052602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 1435177 - 1435064
Alignment:
Q  43 aagaagttaaattagcccatccaaattgata-catggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggc 141  Q
    |||||| |||||||||||| ||||||||| | ||  ||||||| ||| |||||| |||| || || |||||||| |||| | |||||| |||||| | ||    
T  1435177 aagaagctaaattagcccacccaaattgacaccagagagaatcgaac-tgagaccttgaggagaagcacactcctaaatcccaagccagtaccactatgc 1435079  T
Q  142 caacccaggtgggtt 156  Q
    ||||||| |||||||    
T  1435078 caacccaagtgggtt 1435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 1156546 - 1156469
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaaaat 120  Q
    ||||||||||||||  |||  |||||||| | | ||||||||||||||||||| ||||  | ||||||||| ||||||    
T  1156546 aagaagttaaattactccactcaaattgacatagggagaatcaaacatgagaccttgagaagaaacacacttcaaaat 1156469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 37480107 - 37480075
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  37480107 aagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 15739 - 15842
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacat-ggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggc 141  Q
    |||||| |||||||||||| ||||||||  ||   |||||||||||| |||||| |||| ||  | || |||||||||| | ||||||||||||||||||    
T  15739 aagaagctaaattagcccacccaaattggcaccgcggagaatcaaacttgagaccttgaggaggagcatactccaaaatcccaagccaataccaccaggc 15838  T
Q  142 caac 145  Q
    ||||    
T  15839 caac 15842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 15137660 - 15137552
Alignment:
Q  50 taaattagcccatccaaattgatacatg-gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaaccca 148  Q
    |||||||||||| ||||||||| ||  | ||||||| ||| |||||| |||| ||  | |||||||| |||| | ||| || ||||||||||||||||||    
T  15137660 taaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaaccca 15137561  T
Q  149 ggtgggtta 157  Q
     ||||||||    
T  15137560 agtgggtta 15137552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 43590986 - 43590906
Alignment:
Q  77 ggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggtta 157  Q
    |||||||| ||| ||||||||||| ||  | |||||||| || | | |||||||||||||||||||||||||  |||||||    
T  43590986 ggagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtta 43590906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 41519227 - 41519332
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggcc 142  Q
    |||||| |||||||||||| | ||||||| |||  ||||| | ||| |||||| |||| ||  | |||||||| |||| | ||| ||||||||| |||||    
T  41519227 aagaagctaaattagcccacctaaattgacacagagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggcc 41519326  T
Q  143 aaccca 148  Q
    ||||||    
T  41519327 aaccca 41519332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 45559248 - 45559199
Alignment:
Q  108 cacactccaaaattctaagccaataccaccaggccaacccaggtgggtta 157  Q
    ||||||||||  ||| ||||||||||||| ||||||||||| ||||||||    
T  45559248 cacactccaaggttccaagccaataccactaggccaacccaagtgggtta 45559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 20335793 - 20335821
Alignment:
Q  43 aagaagttaaattagcccatccaaattga 71  Q
    |||||||||||||||||||||||||||||    
T  20335793 aagaagttaaattagcccatccaaattga 20335821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 30579367 - 30579335
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  30579367 aagccaataccaccaggccaacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 41487394 - 41487362
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  41487394 aagccaataccaccaggccaacccaagtgggtt 41487362  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 35287794 - 35287712
Alignment:
Q  78 gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggttacaa 160  Q
    ||||||| ||||||| || |||| ||  | |||||||||||||   ||||||| ||||||||||| ||||| |||||||||||    
T  35287794 gagaatcgaacatgataccttgaggaggagcacactccaaaatctcaagccaacaccaccaggcctacccaagtgggttacaa 35287712  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 37816535 - 37816611
Alignment:
Q  42 aaagaagttaaattagcccatccaaattgatacatg--gagaatcaaacatgagacattgacgataaacacactccaa 117  Q
    |||||||||||| |||||||  |||||||| | |||  ||||||||||||||||||||||  || |||||||||||||    
T  37816535 aaagaagttaaactagcccactcaaattgaca-atgaagagaatcaaacatgagacattgcggagaaacacactccaa 37816611  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 44780076 - 44780190
Alignment:
Q  43 aagaagttaaattagcccatccaaattgatacatg-gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggc 141  Q
    |||||| |||||||||||| ||||||||| ||  | | ||||||||| |||||| |||| ||  | |||||||| || | | |||||||| |||| ||||    
T  44780076 aagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaatgccactaggc 44780175  T
Q  142 caacccaggtgggtt 156  Q
    ||||||| |||||||    
T  44780176 caacccaagtgggtt 44780190  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 27979271 - 27979243
Alignment:
Q  43 aagaagttaaattagcccatccaaattga 71  Q
    |||||||||||||||||||||||||||||    
T  27979271 aagaagttaaattagcccatccaaattga 27979243  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 28036540 - 28036512
Alignment:
Q  43 aagaagttaaattagcccatccaaattga 71  Q
    |||||||||||||||||||||||||||||    
T  28036540 aagaagttaaattagcccatccaaattga 28036512  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 43594287 - 43594383
Alignment:
Q  50 taaattagcccatccaaattgatac-atggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaac 145  Q
    |||||||||||||||||||||| || |  ||||||| ||| |||||| |||| ||  |||||| ||| | || ||||||||||| ||| ||||||||    
T  43594287 taaattagcccatccaaattgacactagagagaatcgaacctgagaccttgaggaggaacacattcctagatcctaagccaatatcactaggccaac 43594383  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 9241069 - 9241102
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtta 157  Q
    ||||||||||||||||||||||||| ||||||||    
T  9241069 aagccaataccaccaggccaacccaagtgggtta 9241102  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 19238621 - 19238654
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtta 157  Q
    ||||||||||||||||||||||||| ||||||||    
T  19238621 aagccaataccaccaggccaacccaagtgggtta 19238654  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 9669452 - 9669424
Alignment:
Q  43 aagaagttaaattagcccatccaaattga 71  Q
    |||||||||||||||||||||||||||||    
T  9669452 aagaagttaaattagcccatccaaattga 9669424  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 51250566 - 51250598
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  51250566 aagccaataccaccaggccaacccaagtgggtt 51250598  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 55427244 - 55427276
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  55427244 aagccaataccaccaggccaacccaagtgggtt 55427276  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 112330 - 112282
Alignment:
Q  108 cacactccaaaattctaagccaataccaccaggccaacccaggtgggtt 156  Q
    |||||||| | |||| |||||||||| |||||||||||||| |||||||    
T  112330 cacactcccagattccaagccaatacaaccaggccaacccaagtgggtt 112282  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 19528371 - 19528403
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  19528371 aagccaataccaccaggccaacccaagtgggtt 19528403  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 33700771 - 33700847
Alignment:
Q  78 gagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtggg 154  Q
    ||||||| ||| |||||| |||| ||  | |||||||| | |||| ||||||||||||| ||||||||||| |||||    
T  33700771 gagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 40257431 - 40257399
Alignment:
Q  124 aagccaataccaccaggccaacccaggtgggtt 156  Q
    ||||||||||||||||||||||||| |||||||    
T  40257431 aagccaataccaccaggccaacccaagtgggtt 40257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 52116778 - 52116858
Alignment:
Q  77 ggagaatcaaacatgagacattgacgataaacacactccaaaattctaagccaataccaccaggccaacccaggtgggtta 157  Q
    |||||||  ||| ||||||||||| ||  | |||||||| || | | |||||||||||||||||||||||||  |||||||    
T  52116778 ggagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtta 52116858  T

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