View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19216_low_40 (Length: 240)
Name: NF19216_low_40
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 4783631 - 4783416
Alignment:
| Q |
18 |
gtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| |
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| T |
4783631 |
gtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtagttaagaacttgataatccgtgttgtcaaaac |
4783532 |
T |
|
| Q |
118 |
caggtaaattgacatgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactagg |
217 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4783531 |
caggtaaattgataagataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactagg |
4783432 |
T |
|
| Q |
218 |
attcaattggtctgtg |
233 |
Q |
| |
|
| ||||||||| |||| |
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|
| T |
4783431 |
aatcaattggtttgtg |
4783416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 4816060 - 4815845
Alignment:
| Q |
18 |
gtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
4816060 |
gtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgttgttaagaacttggtattccgtgttgtcagaac |
4815961 |
T |
|
| Q |
118 |
caggtaaattgacatgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactagg |
217 |
Q |
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||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4815960 |
caggtaacttgatacgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactagg |
4815861 |
T |
|
| Q |
218 |
attcaattggtctgtg |
233 |
Q |
| |
|
| ||||||||| |||| |
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|
| T |
4815860 |
actcaattggtttgtg |
4815845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 4644006 - 4644203
Alignment:
| Q |
18 |
gtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaac |
117 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||| | | ||| | | |
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|
| T |
4644006 |
gtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtcattaagaatttggtatggtatatcttcagagc |
4644105 |
T |
|
| Q |
118 |
caggtaaattgacatgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataacta |
215 |
Q |
| |
|
|| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4644106 |
catctaacttgatacgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataacta |
4644203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 4696988 - 4696792
Alignment:
| Q |
16 |
cagtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaa |
115 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| || |
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|
| T |
4696988 |
cagtatcttggtttggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagtccctgttgtctaa |
4696889 |
T |
|
| Q |
116 |
accaggtaaattgacatgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataa |
212 |
Q |
| |
|
|| || | | | |||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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|
| T |
4696888 |
gtcaagtgatatcaaatgatattttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataa |
4696792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 4673016 - 4673195
Alignment:
| Q |
32 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgaca |
131 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| | || |||||||| |||||| ||| |||||||||||||||||| || || || | || | | |
|
|
| T |
4673016 |
tggaacttgactttcaccaacgttgactctataaaccatttccaaagctttttcgttatgaatttggtattccgtgttgtctaagtcaagtgatttcaaa |
4673115 |
T |
|
| Q |
132 |
tgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcata |
211 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
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|
| T |
4673116 |
tgataatttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcata |
4673195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 4711868 - 4711674
Alignment:
| Q |
18 |
gtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaac |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
4711868 |
gtatcttggtttggtggaacttgattttgaccaacgttgactctatataccatttccaaagctttgtcgttatgaatttggtattccgtgttgtcaaagt |
4711769 |
T |
|
| Q |
118 |
caggtaaattgacatgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataa |
212 |
Q |
| |
|
|| || | || | | | || | | ||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
4711768 |
caagtgatttcaaaaggtattttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataa |
4711674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 4864235 - 4864415
Alignment:
| Q |
32 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgaca |
131 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| || || | || | | |
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|
| T |
4864235 |
tggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtcgttaagaacttggtagttcgtgttgtcaaagtcaagtgatttcaaa |
4864334 |
T |
|
| Q |
132 |
tgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataa |
212 |
Q |
| |
|
| ||| | | ||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||| | |||||| |
|
|
| T |
4864335 |
taatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataa |
4864415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 4845792 - 4845601
Alignment:
| Q |
34 |
gaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgacatg |
133 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |||| |||||||| || ||| ||| || |||||| |||||||||| ||| ||| |||| || |
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|
| T |
4845792 |
gaacttgattttcaccaacattgactctataaaccatctccaaagctttatcattacgaatttcgtattctctgttgtcaaagccaattaatttgaaata |
4845693 |
T |
|
| Q |
134 |
ataatcttggtca-ctgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggattcaatt |
225 |
Q |
| |
|
||||| | |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
4845692 |
ataatttaagtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaatt |
4845601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 4637170 - 4637358
Alignment:
| Q |
32 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgaca |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| | |||||||||||| || | || | || | | |
|
|
| T |
4637170 |
tggaacttgattttgaccaacgttgactctataaaccatctccaaagctttgtctttatgaattcggtattccgtgtactctgagtcaactggtttcaaa |
4637269 |
T |
|
| Q |
132 |
tgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataactaggatt |
220 |
Q |
| |
|
| |||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
4637270 |
tagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatt |
4637358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 4667254 - 4667431
Alignment:
| Q |
32 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgaca |
131 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||||||||| | |||||||| |||| ||| |||||||| || ||||||| || |||| | | | |
|
|
| T |
4667254 |
tggaacttgactttcaccaacgctgactctataaaccgtctccatagctttgttgttaggaatatggtattcattgctgtcaaagtcaagtaatgtcaaa |
4667353 |
T |
|
| Q |
132 |
tgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagca |
209 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||| ||||| |
|
|
| T |
4667354 |
tgataatttgggtcactgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagca |
4667431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 4631235 - 4631416
Alignment:
| Q |
27 |
tttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaat |
126 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||||||| || || | |||||||| |||||||| |||||||| | |||||||| || ||| | |
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|
| T |
4631235 |
tttggtggaacttgattttcaccagcgttgactctataaactgtttccatagctttgttgttaagaatctggtattcaccgctgtcaaaatcaagtatct |
4631334 |
T |
|
| Q |
127 |
tgacatgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagc |
208 |
Q |
| |
|
| | ||| || | ||||||||| || ||||||||||||||||||||||||||||||| || |||||||| ||| |||| |
|
|
| T |
4631335 |
ttaaatggtagttcgtgtcactgagattagtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagc |
4631416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 4653925 - 4653989
Alignment:
| Q |
148 |
tgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataa |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
4653925 |
tgaggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataa |
4653989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 4653817 - 4653885
Alignment:
| Q |
16 |
cagtatcttggtttgctggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgt |
84 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||||||| |||||||| ||||| | |||||||| |
|
|
| T |
4653817 |
cagtatctaggtttggtggaacttgattttcaccaacgttgacactataaactgtctccagagctttgt |
4653885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 18925524 - 18925344
Alignment:
| Q |
32 |
tggaacttgattttgaccaacgttgactctataaaccgtctctaaagctttgtcgttaagaacttggtattccgtgttgtcaaaaccaggtaaattgaca |
131 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||||||||| ||||||| | | || ||||| | |||| |||| ||| |||| || | | |
|
|
| T |
18925524 |
tggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaaggccaagtaactttaaa |
18925425 |
T |
|
| Q |
132 |
tgataatcttggtcactgaggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgtaagcataa |
212 |
Q |
| |
|
|||| || | |||| ||||||||||||||||||||||||||||||| ||||| | || |||||||| ||| |||||||| |
|
|
| T |
18925424 |
tgatgatttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa |
18925344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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