View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_42 (Length: 238)
Name: NF19216_low_42
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 33564504 - 33564295
Alignment:
| Q |
9 |
tgaaacaaagaaaatgcaaacttagaaggatgaaatcataatgaaatcaatagagggaataattggtagtggccaagaacgagcaaacaatattgcaggt |
108 |
Q |
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| T |
33564504 |
tgaaacaaagaaaatgcaaacttagaaagatgaattcataatgaaatcaatagagtgaataataggtagcggccgagaacgagcaaacaatattgcaggt |
33564405 |
T |
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| Q |
109 |
aatgagtcagaatttctaagtaaaattgcaacgaggaatccctaaactgatattctaatttacgattagagnnnnnnnnngtaaattgcaaacaaaaccc |
208 |
Q |
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| T |
33564404 |
aatgagtcagaatttctaagcaaaattgcaacgaggaat-tctaaattgatattctaatttacgattagag--tttttttgtaaattgcaaacaaaaccc |
33564308 |
T |
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| Q |
209 |
actttcttttttg |
221 |
Q |
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||||||||||||| |
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| T |
33564307 |
actttcttttttg |
33564295 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 34945882 - 34945938
Alignment:
| Q |
91 |
gcaaacaatattgcaggtaatgagtcagaatttctaagtaaaattgcaacgaggaat |
147 |
Q |
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|||||||| || ||| |||||||||| || |||||||| ||||||||||||||||| |
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| T |
34945882 |
gcaaacaaaatcacagataatgagtcaaaaattctaagtcaaattgcaacgaggaat |
34945938 |
T |
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