View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19216_low_43 (Length: 226)

Name: NF19216_low_43
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19216_low_43
NF19216_low_43
[»] chr5 (2 HSPs)
chr5 (1-226)||(32670871-32671096)
chr5 (84-205)||(702846-702967)
[»] chr7 (3 HSPs)
chr7 (5-62)||(28592391-28592448)
chr7 (1-55)||(2989370-2989424)
chr7 (18-50)||(21924899-21924931)
[»] chr4 (1 HSPs)
chr4 (14-62)||(20135617-20135665)
[»] chr3 (2 HSPs)
chr3 (84-211)||(15086004-15086131)
chr3 (1-50)||(15267021-15267070)
[»] chr2 (1 HSPs)
chr2 (115-211)||(38204512-38204608)
[»] chr1 (1 HSPs)
chr1 (14-50)||(5424766-5424802)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32671096 - 32670871
Alignment:
Q  1 accccaattttttggatcataaatatctaaaggagggatgaagtggtcattgatacatacatacattaatacttgacacatgaatcattgtcatcaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32671096 accccaattttttggatcataaatatctaaaggagggatgaagtggtcattgatacatacatacattaatacttgacacatgaaccattgtcatcaatga 32670997  T
Q  101 gatttccatcattcaaatttttaatagattgcttaaaattatattcttctatggccaatccacaattatttgcaggctcttatattcgtttacaaacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32670996 gatttccatcattcaaatttttaatagattgcttaaaattatattcttctatggccaatccacaattatttgcaggctcttatattcgtttacaaacaaa 32670897  T
Q  201 tttatttattgacccctttcgtgatt 226  Q
    ||||||||||||||||||||||||||    
T  32670896 tttatttattgacccctttcgtgatt 32670871  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 702967 - 702846
Alignment:
Q  84 atcattgtcatcaatgagatttccatcattcaaatttttaatagattgcttaaaattatattcttctatggccaatccacaattatttgcaggctcttat 183  Q
    |||||||||||  ||||||||  |||||||| |||||| | ||||||| | || ||||| ||||||||||| |||||||  |||||| | || ||||| |    
T  702967 atcattgtcattgatgagattgtcatcattcgaattttcattagattgttcaagattattttcttctatggtcaatccatcattattcgaagactctttt 702868  T
Q  184 attcgtttacaaacaaatttat 205  Q
    | ||||||||||||||||||||    
T  702867 actcgtttacaaacaaatttat 702846  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 28592391 - 28592448
Alignment:
Q  5 caattttttggatcataaatatctaaaggagggatgaagtggtcattgatacatacat 62  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  28592391 caatttttaggatcatacatatctaaaggatggatgaagtggtcattgatacctacat 28592448  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2989370 - 2989424
Alignment:
Q  1 accccaattttttggatcataaatatctaaaggagggatgaagtggtcattgata 55  Q
    |||| ||||| | |||||||||||||||||||||| |||||||||||||| ||||    
T  2989370 accctaatttctaggatcataaatatctaaaggagagatgaagtggtcatcgata 2989424  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 21924931 - 21924899
Alignment:
Q  18 cataaatatctaaaggagggatgaagtggtcat 50  Q
    |||| ||||||||||||||||||||||||||||    
T  21924931 catagatatctaaaggagggatgaagtggtcat 21924899  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 20135665 - 20135617
Alignment:
Q  14 ggatcataaatatctaaaggagggatgaagtggtcattgatacatacat 62  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  20135665 ggatcatagatatctaaaggagggatgaagtggtcatcgatacatacat 20135617  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 15086004 - 15086131
Alignment:
Q  84 atcattgtcatcaatgagatttccatcattcaaatttttaatagattgcttaaaattatattcttctatggccaatccacaattatttgcaggctcttat 183  Q
    |||||||||||  ||| ||||  ||||||||||||||| | ||||||| | || ||||| ||| |||| ||| ||||||  |||| | | ||| |||| |    
T  15086004 atcattgtcattgatgggattgtcatcattcaaattttcattagattgttcaagattatcttcatctacggctaatccatcattactcgaaggttcttct 15086103  T
Q  184 attcgtttacaaacaaatttatttattg 211  Q
    | || ||||||||||||||||| |||||    
T  15086104 actcatttacaaacaaatttatctattg 15086131  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15267021 - 15267070
Alignment:
Q  1 accccaattttttggatcataaatatctaaaggagggatgaagtggtcat 50  Q
    |||| ||||||| ||| |||| |||| |||||||||||||||||||||||    
T  15267021 acccaaatttttaggaccatagatatataaaggagggatgaagtggtcat 15267070  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 38204608 - 38204512
Alignment:
Q  115 aaatttttaatagattgcttaaaattatattcttctatggccaatccacaattatttgcaggctcttatattcgtttacaaacaaatttatttattg 211  Q
    ||||||| | || |||| |||| ||||| ||||||||   ||||||||  | || ||| | |||||| || ||||||||||||||||||||||||||    
T  38204608 aaattttaattaaattgtttaagattattttcttctacaaccaatccatcactacttgaatgctcttctactcgtttacaaacaaatttatttattg 38204512  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 5424802 - 5424766
Alignment:
Q  14 ggatcataaatatctaaaggagggatgaagtggtcat 50  Q
    |||||||| || |||||||||||||||||||||||||    
T  5424802 ggatcatagatttctaaaggagggatgaagtggtcat 5424766  T

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