View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19216_low_45 (Length: 217)

Name: NF19216_low_45
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19216_low_45
NF19216_low_45
[»] chr6 (10 HSPs)
chr6 (18-201)||(28177239-28177422)
chr6 (21-201)||(28220006-28220189)
chr6 (33-199)||(28219703-28219867)
chr6 (33-201)||(28133137-28133305)
chr6 (33-199)||(28176936-28177100)
chr6 (33-201)||(28132830-28133000)
chr6 (152-187)||(9158663-9158698)
chr6 (152-187)||(9171730-9171765)
chr6 (143-199)||(7042364-7042420)
chr6 (152-187)||(9129114-9129149)
[»] scaffold0038 (2 HSPs)
scaffold0038 (21-201)||(20504-20687)
scaffold0038 (33-199)||(20201-20365)
[»] scaffold0455 (2 HSPs)
scaffold0455 (33-201)||(10736-10906)
scaffold0455 (43-117)||(11257-11330)
[»] chr3 (2 HSPs)
chr3 (101-201)||(9344739-9344839)
chr3 (100-201)||(9449192-9449293)
[»] chr8 (2 HSPs)
chr8 (129-185)||(44679851-44679907)
chr8 (129-185)||(44687934-44687990)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 28177422 - 28177239
Alignment:
Q  18 cacaaaatttcttaagaatttgagtaaaaaggagccgctgtctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  28177422 cacaaaatttcttaagaatttgagtaaaaaggagccgctgtctatataagaaggaaccgaaaaaaaagctcaatccccacattacacaaatcagcaacct 28177323  T
Q  118 aactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28177322 aactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 28177239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 28220189 - 28220006
Alignment:
Q  21 aaaatttcttaagaatttgagtaaaaaggagccgctgt----ctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacc 116  Q
    |||||||| || ||||| ||||||||||||||||||||    |||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  28220189 aaaatttcctaggaattcgagtaaaaaggagccgctgtttatctatataagaaggaacc-aaaaaaaagctcaatccccacattacacaaatcagcaacc 28220091  T
Q  117 taactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28220090 taactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 28220006  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 28219703 - 28219867
Alignment:
Q  33 gaatttgagtaaaaaggagccgctgtctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacctaactcaattcgtggc 132  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||         |||||||||||||| ||||||||||||||||||||| | ||| ||||    
T  28219703 gaattagagtaaaaaggagccgctagctatataagaaggaaccgaaaaaat--ctcaatccccacatcacacaaatcagcaacctaacttagttcatggc 28219800  T
Q  133 agaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaa 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  28219801 agaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaa 28219867  T

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Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 28133305 - 28133137
Alignment:
Q  33 gaatttgagtaaaaaggagccgctgtctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacctaactcaattcgtggc 132  Q
    ||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| ||||||| || ||||| ||||    
T  28133305 gaattcgagtaaaaaggagccgctgtctatataagaaggaacc-aaaaaaaagctcaatccccacattacacaaatcaccaacctagcttaattcatggc 28133207  T
Q  133 aga-ggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 201  Q
    | | |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  28133206 aaaaggcagaatggtctcagcatccaaaggatcttctcaatctgatatcacaacgactcggcaatgaact 28133137  T

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Target: chr6; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 28176936 - 28177100
Alignment:
Q  33 gaatttgagtaaaaaggagccgctgtctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacctaactcaattcgtggc 132  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||         ||| |||||||||| |||||||||||||||||| || | ||| ||||    
T  28176936 gaattagagtaaaaaggagccgctcgctatataagaaggaaccgaaaaaat--ctcgatccccacatcacacaaatcagcaacctagcttagttcatggc 28177033  T
Q  133 agaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaa 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  28177034 agaggcagattggtatcagcttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaa 28177100  T

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Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 28132830 - 28133000
Alignment:
Q  33 gaatttgagtaaaaaggagccgctgtctatataagaaggaac--cgnnnnnnnngctcaatccccacattacacaaatcagcaacctaactcaattcgtg 130  Q
    ||||| ||||| |||||||||||| |||||||||||||||||  |         | ||||||||||||| ||||||||||| | |||| || ||||| ||    
T  28132830 gaattagagtagaaaggagccgctctctatataagaaggaacaacaacaaaaaaggtcaatccccacatcacacaaatcagtagcctagctgaattcatg 28132929  T
Q  131 gcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  28132930 gcagaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaact 28133000  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 9158663 - 9158698
Alignment:
Q  152 cttccaaaggatcttctcaatctgatatcacaacga 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  9158663 cttccaaaggatcttctcaatctgatatcacaacga 9158698  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 9171765 - 9171730
Alignment:
Q  152 cttccaaaggatcttctcaatctgatatcacaacga 187  Q
    ||||||||||||||||||||||||||||||||||||    
T  9171765 cttccaaaggatcttctcaatctgatatcacaacga 9171730  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 7042420 - 7042364
Alignment:
Q  143 tggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaa 199  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  7042420 tggtctaaacttccaacggagcttctcaatctgatatcacaacgaatcgataatgaa 7042364  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 9129114 - 9129149
Alignment:
Q  152 cttccaaaggatcttctcaatctgatatcacaacga 187  Q
    |||||||||||| |||||||||||||||||||||||    
T  9129114 cttccaaaggatattctcaatctgatatcacaacga 9129149  T

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Target: scaffold0038 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 20687 - 20504
Alignment:
Q  21 aaaatttcttaagaatttgagtaaaaaggagccgctgt----ctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacc 116  Q
    |||||||| || ||||| ||||||||||||||||||||    |||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  20687 aaaatttcctaggaattcgagtaaaaaggagccgctgtttatctatataagaaggaacc-aaaaaaaagctcaatccccacattacacaaatcagcaacc 20589  T
Q  117 taactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20588 taactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 20504  T

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Target: scaffold0038; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 20201 - 20365
Alignment:
Q  33 gaatttgagtaaaaaggagccgctgtctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacctaactcaattcgtggc 132  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||         |||||||||||||| ||||||||||||||||||||| | ||| ||||    
T  20201 gaattagagtaaaaaggagccgctagctatataagaaggaaccgaaaaaat--ctcaatccccacatcacacaaatcagcaacctaacttagttcatggc 20298  T
Q  133 agaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaa 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  20299 agaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaa 20365  T

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Target: scaffold0455 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 201
Target Start/End: Original strand, 10736 - 10906
Alignment:
Q  33 gaatttgagtaaaaaggagccgctgtctatataagaaggaac--cgnnnnnnnngctcaatccccacattacacaaatcagcaacctaactcaattcgtg 130  Q
    ||||| ||||| |||||||||||| |||||||||||||||||  |         | ||||||||||||| ||||||||||| | |||| || ||||| ||    
T  10736 gaattagagtagaaaggagccgctctctatataagaaggaacaacaacaaaaaaggtcaatccccacatcacacaaatcagtagcctagctgaattcatg 10835  T
Q  131 gcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaact 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  10836 gcagaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaact 10906  T

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Target: scaffold0455; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 11330 - 11257
Alignment:
Q  43 aaaaaggagccgctgtctatataagaaggaaccgnnnnnnnngctcaatccccacattacacaaatcagcaacct 117  Q
    ||||||||||||||||||||||||||||| | |         |||||||||||||||||||||||||| ||||||    
T  11330 aaaaaggagccgctgtctatataagaagggaac-aaaaaaaagctcaatccccacattacacaaatcaccaacct 11257  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 9344839 - 9344739
Alignment:
Q  101 acacaaatcagcaacctaactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaac 200  Q
    |||||||||||||||||| ||| || | ||||||| |||||||||||| | || |||||||||||||||||||| ||||| ||||| |||||||||||||    
T  9344839 acacaaatcagcaacctagctccatccatggcagatgcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaac 9344740  T
Q  201 t 201  Q
    |    
T  9344739 t 9344739  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 9449293 - 9449192
Alignment:
Q  100 tacacaaatcagcaacctaactcaattcgtggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaa 199  Q
    |||| |||||||||||||| ||| || | |||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9449293 tacaaaaatcagcaacctagctccatccatggctgaggcagattggtctcaactcccaaaggaacttctcaatctcatatcacaaaggctcgacaatgaa 9449194  T
Q  200 ct 201  Q
    ||    
T  9449193 ct 9449192  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 44679851 - 44679907
Alignment:
Q  129 tggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaac 185  Q
    |||| |||| |||||||||| | |||||||| |||||| ||||||||||||| ||||    
T  44679851 tggcggaggtagattggtctgaacttccaaatgatcttgtcaatctgatatcgcaac 44679907  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 44687934 - 44687990
Alignment:
Q  129 tggcagaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaac 185  Q
    ||||||||| |||||||||| | |||||||  |||||| ||||||||||||| ||||    
T  44687934 tggcagaggtagattggtctgaacttccaactgatcttgtcaatctgatatcgcaac 44687990  T

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