View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_5 (Length: 529)
Name: NF19216_low_5
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Original strand, 37491313 - 37491798
Alignment:
| Q |
18 |
attatggccaaaccattagatcccatacaagtgaatactgaataccgtagtcatgattaaaagttactatttaagtatcacatgagtttttgctctaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491313 |
attatggccaaaccattagatcccatacaagtgaatactgaatattgtagtcatgattaaaagttactatttaagtatcacatgagtttttgctctaatc |
37491412 |
T |
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| Q |
118 |
ttaaacattcgtgatttaaacatactgaggtccaatgtcgtacgcatatcccggctttcg-tctggattagcattgacaggcgacctaatagatcttgga |
216 |
Q |
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|||||||| ||||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
37491413 |
ttaaacat---------------actgaggtccaatatcgtacgcatctcccggctttcggtttggattagcattgacaggcgacctaatagatcttgga |
37491497 |
T |
|
| Q |
217 |
tacactctaataacataatccatatgttcaagacgtcgatatgtaatgtaagtatgagacattttgttccttacaaaccaattgaaatgatttagc--ta |
314 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37491498 |
tacactctgataacataatccatatgttcaagacgtcgatatgtaatgtaagtatgagacattttgttccttacaaaccaattgaaatgatttagctata |
37491597 |
T |
|
| Q |
315 |
agttacagctcaaattctaaaaaaggtctctgtaccccaaaaaagaaaggagatatataaaatgaaactgattttcgatgtgtcagcctccagaatcaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37491598 |
agttacagctcaaattctaaaaaaggtctctgtaccccaaaaaagaaaggagatatataaaatgaaactgattttccatgtgtcagcctccagaatcaga |
37491697 |
T |
|
| Q |
415 |
caa---tgtatgcgaaaggaaagcggagcaacaagccagactagaaagctttccacattattatttttagcctccagaaaaaacgctatatatgtcccct |
511 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491698 |
caatattgtatgcgaaaggaaagcggagcaacaagccagactagaaagctttccacattattatttttagcctccagaaaaaacgctatatatgtcccct |
37491797 |
T |
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