View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_7 (Length: 499)
Name: NF19216_low_7
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 26 - 499
Target Start/End: Original strand, 21620698 - 21621163
Alignment:
| Q |
26 |
taaagacaacaaaacaatatgtctaagactgcaaggttttgtctgcgtacaatagaaatagggtaaactattttctgtccaaattaaattttagtgataa |
125 |
Q |
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| T |
21620698 |
taaagacaacaaaacaatatgtctaagactgcaaggttttgtctgcgaacaatagaaatagggtaaactattttctgtccaaattaaattttagtgataa |
21620797 |
T |
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| Q |
126 |
caaagaatcaatgtttcctaggcatgcatcatgtttgtctagtgaagcgggggtggttgatttgatgatacatatatttcttagggcatgtgatggccac |
225 |
Q |
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| T |
21620798 |
caaagaatcaatgtttcctaggcatgcatcatgtttgtctagtgaag-ggaggtgg-----ttgatgatacatacatttcttagggcatgtgatggccac |
21620891 |
T |
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| Q |
226 |
catgtgactatagttggagcttaaattaaatatgaatcttgtctggtagtagcaatataagagtacaattatttcatatataatctacagtatcacatga |
325 |
Q |
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| T |
21620892 |
catgtgactatagttggagcataaattaaatatgaatcttgtctggtagtagcaatataagagtacaattatttcatatataatctacagtatcacatga |
21620991 |
T |
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| Q |
326 |
tgtacacatgtctttgcatgtattattgtgtgtttcatttagatcattcaaagcttttagagagaaaatgcaagtttgtgattggccatgtttagttggt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21620992 |
tgtacacatgtctttgcatgtattattgtgtgtttcatttagatcattcaaagcttttagagagaaaatgcaagtttgtgattggccatgtttagttggt |
21621091 |
T |
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| Q |
426 |
tatcaaaatgnnnnnnnnnntgtgataaaatagggagtttcaaagtcaaccgatatgaagatagatacctacat |
499 |
Q |
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| T |
21621092 |
tatcaaaatgaaaaaaaaa--gtgataaaatagggagtttcaaagtcaaccgatatgaagatagatacttacat |
21621163 |
T |
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