View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_8 (Length: 472)
Name: NF19216_low_8
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 9157974 - 9157696
Alignment:
| Q |
10 |
ataatactaagtgaaggtgctgttttgttatcaacatatcatgcatatttggttagaaaaattctcagaaacccaataggtttttcttcttttctagttt |
109 |
Q |
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| T |
9157974 |
ataatactaagtgaaggtgctgttttgttatcaacatatcatgcatatttggttagaaaaattctcagaaacccagtaggtttttcttcttttctagttt |
9157875 |
T |
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| Q |
110 |
tctttgtagttatga-------gcttaatctcatannnnnnngagctgtaatattcccatatttgtgttaattactaacatgaaatgtgaataagtttgt |
202 |
Q |
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| T |
9157874 |
tctttgtagttatgacttatgagcttaatctcatatttttttgagctgtaatattcccatatttgtgtcaattaccaacttgaaatgtgaataagtttgt |
9157775 |
T |
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| Q |
203 |
accatcatatgcagttatccaccaatggactgacttatggtcaattggatcagtacaataaccttgcatcggcatagca |
281 |
Q |
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| T |
9157774 |
accatcatatgtagttatccaccaatggactgacttatggtcaattggatcagtacaataaccttgcatcggcatagca |
9157696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 9172435 - 9172713
Alignment:
| Q |
10 |
ataatactaagtgaaggtgctgttttgttatcaacatatcatgcatatttggttagaaaaattctcagaaacccaataggtttttcttcttttctagttt |
109 |
Q |
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| T |
9172435 |
ataatactaaaagaaggtgctgttttgttatcaacatatcatgcatatttggttagaaaaattctcagaaacccagtaggtttttcttcttttctagttt |
9172534 |
T |
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| Q |
110 |
tctttgtagttatga-------gcttaatctcatannnnnnngagctgtaatattcccatatttgtgttaattactaacatgaaatgtgaataagtttgt |
202 |
Q |
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| T |
9172535 |
tctttgtagttatgacttatgagcttaatctcatatttttttgagctgtaatattcccatatttgtgtcaattaccaacttgaaatgtgaataagtttgt |
9172634 |
T |
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| Q |
203 |
accatcatatgcagttatccaccaatggactgacttatggtcaattggatcagtacaataaccttgcatcggcatagca |
281 |
Q |
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| T |
9172635 |
accatcatatgtagttatccaccaatggactgacttatggtcaattggatcagtacaataaccttgcatcggcatagca |
9172713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 283 - 454
Target Start/End: Complemental strand, 9156775 - 9156602
Alignment:
| Q |
283 |
aaactcattgtgtatgcgtgctatgctaacaaagcgcagaaactagcttcgcgaatagcttaactcaaaaacacgtttactgcataaacagtaaaaactt |
382 |
Q |
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|||||| ||||||||||||| |||||||||| |||||| |||| |||||||| ||||||||||| ||||||||||||||||||| | |||||| |||||| |
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| T |
9156775 |
aaactcgttgtgtatgcgtgatatgctaacatagcgcacaaaccagcttcgcaaatagcttaacccaaaaacacgtttactgcaaagacagtagaaactt |
9156676 |
T |
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| Q |
383 |
gattagagcctgcgtactatgaagagttgcaacag-ccgtttttcaaactatat-ccctctaacaagaccttgt |
454 |
Q |
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| T |
9156675 |
tattagagcctgcatactgtgaagagttgcagcagtccctttttcaaattatataccctctaacaagaccttgt |
9156602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 9173651 - 9173731
Alignment:
| Q |
283 |
aaactcattgtgtatgcgtgctatgctaacaaagcgcagaaactagcttcgcgaatagcttaactcaaaaacacgtttact |
363 |
Q |
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| T |
9173651 |
aaactcattgtgtatgcgtgctatgctaacaaagcgcagaaactagcttcgcgaatagcttaactcaaaaacacgtttact |
9173731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 9173743 - 9173795
Alignment:
| Q |
402 |
tgaagagttgcaacagccgtttttcaaactatatccctctaacaagaccttgt |
454 |
Q |
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| T |
9173743 |
tgaagagttgcaacagccgtttttcaaactatatccctctaacaaaaccttgt |
9173795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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