View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_low_9 (Length: 461)
Name: NF19216_low_9
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 52861323 - 52861783
Alignment:
| Q |
1 |
ctctctggaaactcattttcaggtgttctgcctcaagatattggagatcnnnnnnngttagaagagttaaggctttctgataatttgttatctggtgttg |
100 |
Q |
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| T |
52861323 |
ctctctggaaactcattttcaggtgttctgcctcaagatattggagatctttttttgttagaagagttaaggctttctgataatttgttatctggtgttg |
52861422 |
T |
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| Q |
101 |
ttccaagtagcattgttaaatgtaggttattgaaggttctttatcttcaaagaaatcgattatcaggtctcattccttattttcttggtgaattgaaaag |
200 |
Q |
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| T |
52861423 |
ttccaagtagcattgttaaatgtaggttgttgaaggttctttatcttcaaagaaatcgattatcaggtctcattccttattttcttggtgaattgaaaag |
52861522 |
T |
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| Q |
201 |
tttgaaggagttatctcttggcggtaactattttactggttcaattccaaaaagttatggaatgcttaatgagttagagattttggatttaagcaacaat |
300 |
Q |
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| T |
52861523 |
tttgaaggagttatctcttggtggtaactattttactggttcaattccaaaaagttatggaatgcttaatgagttagagattttggatttaagcaacaat |
52861622 |
T |
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| Q |
301 |
aaattgaatgggattttgctttcggaaatcatgcagttaggtaacatgagtgttttgaatctcagcaataatagattctccggtcaagtttcgtttcaaa |
400 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52861623 |
aaattgaatgggattttgccttcggaaatcatgcagttaggtaacatgagtgttttgaatctcagcaataatagattctccagtcaagtttcgtttcaaa |
52861722 |
T |
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| Q |
401 |
ttggagacttgaccgctttgcaggttcttaatttgagtcactgtggcttttctggtagtgt |
461 |
Q |
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| T |
52861723 |
ttggagacttgaccgctttgcaggttcttaatttgagtcactgtggcttttctggtagtgt |
52861783 |
T |
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