View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19217_low_1 (Length: 499)
Name: NF19217_low_1
Description: NF19217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19217_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 13 - 480
Target Start/End: Original strand, 49179559 - 49180025
Alignment:
| Q |
13 |
cagatcatgtactataaactatgaaggccgggaagatgaacttcgatttacaaaatatattctactgaatgcgcggcttttaggggtcatgaaaatcaac |
112 |
Q |
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| T |
49179559 |
cagatcatgtactataaactatgaaggccgggaagatgaacttcgatttacaaaatatattctactgaatgcgcggcttttaggggtcatgaaaatcaac |
49179658 |
T |
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| Q |
113 |
attagccattcatcaaatccaaagccaaatcggcgtattttaaaagaagagttatcctcgtttccaaggatttctcgcaaatgtaagctttcagttagtt |
212 |
Q |
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| T |
49179659 |
attagccattcatcaaatccaaagccaaatcggcgtattttaaaagaagagttatcctcgtttccaaggatttctcgcaaatgtaagctttcagttagtt |
49179758 |
T |
|
| Q |
213 |
gaaggacataggattgtctctacatacaaatgaaatcgaaagaagccttttaatatgatctaatttgacggctaactgccattatggtggaagaactttg |
312 |
Q |
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| T |
49179759 |
gaaggacataggattgtctctgcatacaaatgaaatggaaagaagccttttaatatgatctaatttgacggttaactgccattatggtggaagaactttg |
49179858 |
T |
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| Q |
313 |
caatttatgtttcattactggatggatgtattatttattttattgaatagttttaactgtaatactaacttaattgtctattcttagctatggataaatt |
412 |
Q |
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| T |
49179859 |
caatttatgtttcattattggatggatgtatta-ttattttattgaatagttttaactgtaatattaacttaattgtctattcttagctatggataaatt |
49179957 |
T |
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| Q |
413 |
tagttgctactcttaagtgaattaactatctattagctgccatatatcttctctcccatatgagttta |
480 |
Q |
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| T |
49179958 |
tagttgctactcttaagtgaattaactatttattagctaccatatatcttctctcccatatgagttta |
49180025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 49170564 - 49170156
Alignment:
| Q |
16 |
atcatgtactataaactatgaaggccgggaagatgaacttcgatttacaaaatatattctactgaatgcgcggcttttaggggtcatgaaaatcaacatt |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| | | ||||||||||||||||||||||||| | |||| | | |
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| T |
49170564 |
atcatgtactataaactatgaaggcttggaagatgaacttcaatttgcaaaatatattttgcagaatgcgcggcttttaggggtcatgcagatcaccggt |
49170465 |
T |
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| Q |
116 |
agccattcatcaaatccaaagccaaatcggcgtattttaaaagaagagttatcctcgtttccaaggatttctcgcaaatgtaagctttcagttagttgaa |
215 |
Q |
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| || || || | |||||||| || || |||| ||||| |||| ||||| ||||||||||||| | ||||||| |||||| || |||||| |
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| T |
49170464 |
acttttttatttaaacaaaagccaagtctgcaacctttacaagaa---ttatactcgtgtccaaggatttcttccgaatgtaaactttcaattggttgaa |
49170368 |
T |
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| Q |
216 |
ggacataggattgtctctacatacaaatgaaatcgaaagaagccttttaatatgatctaatttgacggctaactgccattatggtggaagaactttgca- |
314 |
Q |
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| T |
49170367 |
ggacataggattgtctctacatacaaatgaacgggaaagaaggttcttaatatgatctaatttgacagcgaacagccattatggtggaagaactttgcat |
49170268 |
T |
|
| Q |
315 |
-------atttatgtttcattactggatggatgtattatttattttattgaatagttttaactgtaatactaacttaattgtctattcttagctatggat |
407 |
Q |
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|||||| |||||| | ||||||| ||||| |||||||||||||| ||||| | ||||||| ||| |||| ||||||| ||||||| | | |
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| T |
49170267 |
tttatcgttttatgcttcattttttgatggatatatta-ttattttattgaatggtttttattgtaatattaaactaatggtctatttttagctactggt |
49170169 |
T |
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| Q |
408 |
aaatttagttgct |
420 |
Q |
| |
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||||||||||||| |
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| T |
49170168 |
aaatttagttgct |
49170156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 467
Target Start/End: Complemental strand, 49170154 - 49170121
Alignment:
| Q |
434 |
ttaactatctattagctgccatatatcttctctc |
467 |
Q |
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| T |
49170154 |
ttaactatctattagctaccatatatcttctctc |
49170121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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