View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_high_1 (Length: 642)
Name: NF19218_high_1
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 43585451 - 43584818
Alignment:
| Q |
1 |
atcagttatggaactattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatgataaacataccaagcctcctgtggcatacttgagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585451 |
atcagttatggaactattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatgataaacataccaagcctcctgtggcatacttgagga |
43585352 |
T |
|
| Q |
101 |
gaaagcatgctactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtgatctgtcccccaatagccaacccaaaggtcacagc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585351 |
gaaagcatgccactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtgatctgtcccccaatagccaacccaaaggtcacagc |
43585252 |
T |
|
| Q |
201 |
tgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaaccatgacaaacagcaactgctactaatccagcaggatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585251 |
tgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaaccatgacaaacagcaactgctactaatccagcaggatca |
43585152 |
T |
|
| Q |
301 |
agagctgcacctgatgtcaacttagctgcaaaagtaca--------aagtgtttggtttccataactcaaactttcttcaatgaaatatcttatcatggt |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585151 |
agagctgcacctgatgtcaacttagctgcaaaagtacaaagtttttaagtgtttggtttccataactcaaactttcttcaatgaaatatcttatcatggt |
43585052 |
T |
|
| Q |
393 |
aaaaacaatgtattactttagaagtggcatagtcattttggttttaattcatttgtaaagaagaaaaaactaaccataggctatggctgaaccaacacca |
492 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585051 |
aaaaacaatgtattactttagaaatggcatagtcattttggttttaattcatttgtaaagaagaaaaaactaaccataggctatggctgaaccaacacca |
43584952 |
T |
|
| Q |
493 |
gcaaaaacaaagatcaaggttgagatgaactcagcaacataagccctaatggagctcacactgaaagaatcatcaaagcgtccaaaggctatgccacgac |
592 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43584951 |
gcaaaaacaaagatcaaggttgagatgaactcagcaacataagccctaatggagctcacactgaaagaatcatcaaagcgtccaaaggctatgccacgac |
43584852 |
T |
|
| Q |
593 |
ccatctacacaagtttctagtgaaggaaaggata |
626 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
43584851 |
ccatctacacaagtttctagtgaaggaaaggata |
43584818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 66 - 332
Target Start/End: Original strand, 4190049 - 4190315
Alignment:
| Q |
66 |
taaacataccaagcctcctgtggcatacttgaggagaaagcatgctactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtg |
165 |
Q |
| |
|
||||| |||||||||||| ||| || ||| ||| ||||| ||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || |
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| T |
4190049 |
taaacttaccaagcctccagtgacaaactggagaagaaaacatgcaacaatggatccaagaagctgagcaatccagtagaagataccagtgaggatggta |
4190148 |
T |
|
| Q |
166 |
atctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaaccat |
265 |
Q |
| |
|
|||||||| |||| |||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| | ||||||||||||||| |||||||||| |
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| T |
4190149 |
atctgtccaccaacagccaatccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaaaccat |
4190248 |
T |
|
| Q |
266 |
gacaaacagcaactgctactaatccagcaggatcaagagctgcacctgatgtcaacttagctgcaaa |
332 |
Q |
| |
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| T |
4190249 |
ggcaaacagcaactgctagtaaccctgctggatcaagagctgcatctgatgtcaacttacctgcaaa |
4190315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 4190784 - 4190927
Alignment:
| Q |
445 |
ttgtaaagaagaaaaaactaaccataggctatggctgaaccaacaccagcaaaaacaaagatcaaggttgagatgaactcagcaacataagccctaatgg |
544 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||| |||| | |
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| T |
4190784 |
ttgtaaagaagagaaaactaaccataggctatggctgaaccaacaccagcaaaaacaaagagcaatgttgagatgaactcagcaatataggccttaattg |
4190883 |
T |
|
| Q |
545 |
agctcacactgaaagaatcatcaaagcgtccaaaggctatgcca |
588 |
Q |
| |
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||| | |||||| |||||||||| | |||||| ||||||||| |
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| T |
4190884 |
agccaaaactgaatgaatcatcaagccttccaaatgctatgcca |
4190927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 23339534 - 23339461
Alignment:
| Q |
187 |
ccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaa |
260 |
Q |
| |
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||||| || ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||| |
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| T |
23339534 |
ccaaaagtgacagcagggttgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaa |
23339461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 7655635 - 7655586
Alignment:
| Q |
202 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
251 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
7655635 |
gggttcacatgtccaccagatatgtttgctccaacagaaacggcaacaaa |
7655586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 41418460 - 41418527
Alignment:
| Q |
190 |
aaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagc |
257 |
Q |
| |
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||||| ||||| ||||||||||||||||| || ||||| || ||||| || ||||||||||| ||||| |
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| T |
41418460 |
aaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaagagagc |
41418527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 3929665 - 3929549
Alignment:
| Q |
115 |
atggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtgatctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtc |
214 |
Q |
| |
|
||||| ||||| | ||| |||||||| ||||||| |||||| ||||| ||||| | || ||||| || || ||||| || ||||||||||| | ||||| |
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| T |
3929665 |
atggagccaagcaattgggcaatccaatagaagagaccagttaggatggtgatgttgcctccaatggctaatccaaaagtaacagctgggttcaaatgtc |
3929566 |
T |
|
| Q |
215 |
caccagatatgttggct |
231 |
Q |
| |
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|||| || ||||||||| |
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| T |
3929565 |
cacctgagatgttggct |
3929549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 52103081 - 52103130
Alignment:
| Q |
202 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
251 |
Q |
| |
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||||| |||||||||||||| ||||| || |||||||||||||| ||||| |
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|
| T |
52103081 |
gggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaa |
52103130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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