View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_high_26 (Length: 238)
Name: NF19218_high_26
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 298752 - 298912
Alignment:
| Q |
51 |
caaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagagggagaaacagaagccattgagtctct |
150 |
Q |
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| T |
298752 |
caaagaacagcacatgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagagggagaaacagaagccattgagtctct |
298851 |
T |
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| Q |
151 |
acggttagctggaattaaggtctggtgataagctagagactgcaatttcaattggtctgtg |
211 |
Q |
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| T |
298852 |
acggctagctggaattaaggtctggtgataagctagagactgcaatttcaattggtctgtg |
298912 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 301033 - 301067
Alignment:
| Q |
174 |
ggtgataagctagagactgcaatttcaattggtct |
208 |
Q |
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| T |
301033 |
ggtgataagctagagactgcaatttcaattggtct |
301067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 300975 - 301034
Alignment:
| Q |
65 |
tgtagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagaggg |
126 |
Q |
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| T |
300975 |
tgtagaattcaaactaaacctacttggggcaactggagtt--gaggacaagatgcaagaggg |
301034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 27465584 - 27465478
Alignment:
| Q |
67 |
tagaatgcaaaccaaacctacttggagcaactagagttgagaggacaagctgcaagagggagaaacagaagccattgagtctctacggttagctggaatt |
166 |
Q |
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| T |
27465584 |
tagaatgcaatttaaatctacttggagcaactggaattgag--gacaagctgcaagagggtgtaccagaagccattgagtccctacggcaagctggaatc |
27465487 |
T |
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| Q |
167 |
aaggtctgg |
175 |
Q |
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| T |
27465486 |
aaggtctgg |
27465478 |
T |
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