View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_high_6 (Length: 497)
Name: NF19218_high_6
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Original strand, 35918133 - 35918596
Alignment:
| Q |
9 |
gagcacagacaagaaaagacaattgaggattgaggaaagcaagaaaatcaaataggttgctgacaagttggcagccatcatttccaagaatataggacaa |
108 |
Q |
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| T |
35918133 |
gagcacagacaagaaaagacaattgaggattgaggaaagcaagaaaatcaaattggttgctgacaagttggcagccatcatttccaagaatataggacaa |
35918232 |
T |
|
| Q |
109 |
gaaaaacaaaaggtaatatagctttgatcagcagttattgacagttacaaagaatgagttccactaaaatttataaactctagacaatgtaaatgacaca |
208 |
Q |
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| T |
35918233 |
gaaaaacaaaaggtaatatagctttgatcagcagttattgacagttacaaagaatgagttccactaaaatttataaactctagacaatgtaaatgacaca |
35918332 |
T |
|
| Q |
209 |
ttgaatttgacacacgtttgaaacatgttcactttttagggaaaagtgactactaaaaaatgagtttgtcacaaaacccttaaatttgaaatttagtann |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35918333 |
ttgaatttgacacaggtttgaaacatgttcactttttagggaaaagtgactactaaaaaatgagtttgtcacaaaacccttaaatttgaaatttagtatt |
35918432 |
T |
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| Q |
309 |
nnnnnnnnngttaacaatgttattgatgcgaaatatcaaccaactttgctgagtactctctagcgaggaatctggctggccacccatcgtgggatctccc |
408 |
Q |
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| T |
35918433 |
tttttttttgttaacaatgttattgatgcgaaatatcaaccaactttgctgagtactctctagcgaggaatctggctggccacccatcgtgggatctccc |
35918532 |
T |
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| Q |
409 |
ctcccaaccacattttttcatccaaaaagttcaaactttgcttagaggatccaagcctaatttt |
472 |
Q |
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| T |
35918533 |
ctcccaaccacattttttcatccaaaaagctcaaactttgcttaaaggatccaagcctaatttt |
35918596 |
T |
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