View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_10 (Length: 426)
Name: NF19218_low_10
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 41573917 - 41574327
Alignment:
| Q |
1 |
ccaattgagtgactagattattttggtctccatagagactaaattttataaatgatctttaaattgatcgctaaataattttgtgattgattgaggccga |
100 |
Q |
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| T |
41573917 |
ccaattgagtgactagattatttcggtctccatagagactaaattttataaatgatctttaaattgatcgctaaataattttgtgattgattgaggccga |
41574016 |
T |
|
| Q |
101 |
tttgtgaaaagtcattaaaccacttgttaatgttggtgatcaattaagttacatggacgttttgagtctctaaatccatcatgatagttttttgtattac |
200 |
Q |
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| T |
41574017 |
tttgtgaaaagtcattaaaccacttgttaatgttggtgatcaattaagttacatggacgttttgagtct--aaatccatcatgatagttttttgtattac |
41574114 |
T |
|
| Q |
201 |
ctcataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattccttaaaataatgtcttccactatcatcattgagtgtgtcc |
300 |
Q |
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| T |
41574115 |
ctcataaaatgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattctttaaaataatgtcttccactatcatcattgagtgtgtcc |
41574214 |
T |
|
| Q |
301 |
tgcgcaccatagaaaccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgcttgtgctccaacctctcctggtgaaggtggaggag |
400 |
Q |
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| T |
41574215 |
tgcgcaccatagaaaccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgcttgtgctccaacctctcctggtgaaggtggaggag |
41574314 |
T |
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| Q |
401 |
aagtgttctgttc |
413 |
Q |
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| T |
41574315 |
aagtgttctgttc |
41574327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 41565909 - 41565988
Alignment:
| Q |
196 |
attacctcataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattccttaaaataatgtct |
275 |
Q |
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| T |
41565909 |
attacctcataaagtgatcaaccatttccaaatatgaaatcaatagatccttggatgaaacattctttaaaataatgtct |
41565988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 369
Target Start/End: Complemental strand, 41435868 - 41435702
Alignment:
| Q |
203 |
cataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattccttaaaataatgtcttccactatcatcattgagtgtgtcctg |
302 |
Q |
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| T |
41435868 |
cataaagtgatctaccatttacaaatatgaaatcgatagatccttcgatgaaacattctttaaaataatatctcccttgatcatcaagtagtgtatcttt |
41435769 |
T |
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| Q |
303 |
cgcaccatagaaaccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgcttgt |
369 |
Q |
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| T |
41435768 |
tgcactataaaacccacatcaataaaatgcagcttgatcactgttaacacttagcgccactgtttgt |
41435702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 36815407 - 36815354
Alignment:
| Q |
198 |
tacctcataaagtgatctagcatttccaaatataaaatcaatggatccttgaat |
251 |
Q |
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| T |
36815407 |
tacctcatagagtgaccttgcattgccaaatataaaatcaatggatccttgaat |
36815354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 41566014 - 41566063
Alignment:
| Q |
316 |
ccacatccatagaatgcggcttgatcaccggtaactctcagtgccactgc |
365 |
Q |
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| T |
41566014 |
ccacatccatagaatgcggcttgatcaccgttaactcttagcgccactgc |
41566063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 41400284 - 41400350
Alignment:
| Q |
198 |
tacctcataaagtgatctagcatttccaaatataaaatcaatggatccttgaatgaaacattcctta |
264 |
Q |
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| T |
41400284 |
tacctcaaaaaatgacctagcatttccgaatataaagtcaatcgatccttcaataaaacgttcctta |
41400350 |
T |
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