View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_11 (Length: 408)
Name: NF19218_low_11
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 32272486 - 32272110
Alignment:
| Q |
16 |
acatcggatgataaagataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
115 |
Q |
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| T |
32272486 |
acatcggatgagaaagataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgcttttataa |
32272387 |
T |
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| Q |
116 |
attatattattttcatgttcattaaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattatttt |
215 |
Q |
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| T |
32272386 |
attatattattttcatgttcat-aaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatgaattatttt |
32272288 |
T |
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| Q |
216 |
gattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatg |
315 |
Q |
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| T |
32272287 |
gattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatg |
32272188 |
T |
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| Q |
316 |
gctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaac |
393 |
Q |
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| T |
32272187 |
gctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaac |
32272110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 45416311 - 45416267
Alignment:
| Q |
283 |
attggagctggatatgttggtggtcccacaatggctgtgattgcc |
327 |
Q |
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| T |
45416311 |
attggagctggatatgtagggggtccaacaatggctgttattgcc |
45416267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 19327411 - 19327326
Alignment:
| Q |
261 |
aaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattg |
346 |
Q |
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| T |
19327411 |
aaaaatggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggctgtgattgctttgaagtgtcctgagattg |
19327326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 3665277 - 3665213
Alignment:
| Q |
262 |
aaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgc |
326 |
Q |
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| T |
3665277 |
aaaatggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcattgc |
3665213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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