View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_14 (Length: 361)
Name: NF19218_low_14
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 25287321 - 25287051
Alignment:
| Q |
19 |
tgaggtcctgtttctattgggatttttaaggagtttggtcaggatgcta-ggtagttataatttatgtcttcnnnnnnnaactttttgatttgttgtggt |
117 |
Q |
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| T |
25287321 |
tgaggtcctggttctattgggatttttaagaagga--gttgggatgctaaggtagttataatttatgtcttctttttttaactttttgatttgttgtggt |
25287224 |
T |
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| Q |
118 |
ggttgatgtatgtgttaatggattttatgtgaaaatcgattttcggtgaaggattgaattgtgttattgttgtttaaggcgataggattagagtcatgta |
217 |
Q |
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| T |
25287223 |
ggttgatgtatgtgttaatggattttatgtgaaaatcgattttcgctgaaggattgaattgtgttattgttgtttaaggcaataggattagagtcatgta |
25287124 |
T |
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| Q |
218 |
ataaaattaaactgaagaaatatataggtgatagtagttgatatttatcaaaattgagtatatgattttggct |
290 |
Q |
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| T |
25287123 |
ataaaattaaactgaagaaatatataggcggtagtagttgatatttatcaaaattgagtatatgattttggct |
25287051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 25286998 - 25286939
Alignment:
| Q |
292 |
aagaagggtttgtttcatgaagcacttgaaatttcctgcacttaaaccttttttcctatg |
351 |
Q |
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| T |
25286998 |
aagaagggtttgtttcatgaagcacttgcaatttcctgcacttaaaccttttttcctatg |
25286939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 25286878 - 25286833
Alignment:
| Q |
301 |
ttgtttcatgaagcacttgaaatttcctgcacttaaaccttttttc |
346 |
Q |
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| T |
25286878 |
ttgtttcataaagcacttgcaatttcctgcacatacaccttttttc |
25286833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 15808053 - 15807805
Alignment:
| Q |
24 |
tcctgtttctattgggatttttaaggag-tttggtcaggatgcta-ggtagttataatttatgtcttcnnnnnnnaactttttgatttgttgtggt-ggt |
120 |
Q |
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| T |
15808053 |
tcctggttctattgggatgcttaaggaggtttgatcaggatgctaaggtagttatattttatgtcttattttttgaacttta-gatttgttgtggttggt |
15807955 |
T |
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| Q |
121 |
tgatgtatgtgttaatggattttatgtgaaaatcgattttcggtgaaggattgaattgtgttattgttgtttaaggcgataggattagagtcatgtaata |
220 |
Q |
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| T |
15807954 |
tgatgcatgtgaaaatggattttatgtgaaaattgatttttggtgaaggattgagttgtgtgattgttgttgaaggcaataggattatagtcatgtaata |
15807855 |
T |
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| Q |
221 |
aaattaaactgaagaaatatataggtgatagtagttgatatttatcaaaa |
270 |
Q |
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| T |
15807854 |
aaattaaactgaagaaatatataggtagtagtagttgatgtttatcaaaa |
15807805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 17204368 - 17204497
Alignment:
| Q |
22 |
ggtcctgtttctattgggattttt---aaggagtttggtcaggatgct-aggtagttataatt--tatgtcttcnnnnnnnaactttttgatttgttgtg |
115 |
Q |
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| T |
17204368 |
ggtcctggttctattgggatttttaagaaggagtttggtcaggatgctaaggtagttatgatttgtatgtcttagttttggaacttgttgatttgttgtg |
17204467 |
T |
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| Q |
116 |
g-tggttgatgtatgtgttaatggatttta |
144 |
Q |
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| T |
17204468 |
gttggttgatgtatgtggaaatggatttta |
17204497 |
T |
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