View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_15 (Length: 354)
Name: NF19218_low_15
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 78 - 354
Target Start/End: Original strand, 1836270 - 1836546
Alignment:
| Q |
78 |
tatcccctccttgctgatctaagatttccaaataaaaccttaattatatgagattccacgaatttgaattagtggtattctaaaatcccatgacacctaa |
177 |
Q |
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| T |
1836270 |
tatcccctccttgctgatcaaagatttccaaataaaaccttaattatatgagattccacgaatttggattagtggtattctaaaatcccatgacacctaa |
1836369 |
T |
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| Q |
178 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
277 |
Q |
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| T |
1836370 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
1836469 |
T |
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| Q |
278 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattaccatgctcttaatttcactttcagtcaacatt |
354 |
Q |
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| T |
1836470 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattaccatgctcttaatttcactttcaatcaacatt |
1836546 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 1836171 - 1836240
Alignment:
| Q |
10 |
tccaagaatatctagggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
79 |
Q |
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| T |
1836171 |
tccaagaaaatctagggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
1836240 |
T |
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