View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_16 (Length: 344)
Name: NF19218_low_16
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 33992974 - 33992653
Alignment:
| Q |
6 |
aggagcacagatcttctcggaaggtggtcttgactatttagggaacccaaaccttgttcatgcacaaagcatcttagcagtactaggtttccaagttgtt |
105 |
Q |
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| T |
33992974 |
aggatcacaaatcttctcggaaggtggtcttgactatttagggaacccaaaccttgttcatgcacaaagcatcttagcagtactaggtttccaagttgtt |
33992875 |
T |
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| Q |
106 |
ctaatgggtcttgttgaaggctttcgcatcaacggtcttcctggtgtcggagagggcaacaacctctaccctggtggccaatactttgaccctcttggtc |
205 |
Q |
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| T |
33992874 |
ctaatgggtcttgttgaaggctttcgcatcaacggtcttcctggtgtcggagagggcaacaacctctaccctggtggccaatactttgaccctcttggtc |
33992775 |
T |
|
| Q |
206 |
tagccgacgatccagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctat |
305 |
Q |
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| T |
33992774 |
tagccgacgatccagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctat |
33992675 |
T |
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| Q |
306 |
tgttactggtaaaggacctttg |
327 |
Q |
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| T |
33992674 |
tgttactggtaaaggacctttg |
33992653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 3572981 - 3573064
Alignment:
| Q |
241 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacct |
324 |
Q |
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| T |
3572981 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacct |
3573064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 42603046 - 42603171
Alignment:
| Q |
189 |
ctttgaccctcttggtctagccgacgatccagttactttcgccgagcttaaagtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggt |
288 |
Q |
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|||||||||||||||||| || || || || | | | ||||| ||| | || || |||||| |||| || || ||||||||||||| || ||||||||| |
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| T |
42603046 |
ctttgaccctcttggtcttgctgatgaccccgatgcattcgcagagttgaaggtcaaggaactcaagaacggccgattggctatgttctccatgtttggt |
42603145 |
T |
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| Q |
289 |
ttctttgttcaagctattgttactgg |
314 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
42603146 |
ttctttgttcaagccattgttactgg |
42603171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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