View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19218_low_2 (Length: 592)
Name: NF19218_low_2
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 28849333 - 28848982
Alignment:
| Q |
6 |
agaagcataggaggaaggataatgatgagcctaagtcaactagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaacttgg |
105 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
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| T |
28849333 |
agaagcttaggaggaaggataatgatgagcctaagtcaactagcaagaagggaaagagaaatcaggagactgtgaggtgcacaatatgtaaggaacttgg |
28849234 |
T |
|
| Q |
106 |
acataacatgatgacttgtaagggtaaaacagctgctgataggtcaattagacctggagggaacaaggtaataacacactttctaggttataacactttc |
205 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28849233 |
acataacatgaggacttgtaagggtaaaacaactgctgataggtcaattagacctggagggaacaaggtaataacacactttctaggttataatacttta |
28849134 |
T |
|
| Q |
206 |
tgatatataacacaacttctgatatataacacactttgtgatattgtaggataatactgatattcaacaccccgaggcttcaaat--------------- |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28849133 |
tgatatataacacaacttctgatatataacacactttgtgatattgtaggataatactgatattcaacaccctaaggcttcaaatccacaagcttcaaat |
28849034 |
T |
|
| Q |
291 |
gcacaacactcaaatgcacaagcttcagtcaacacaaatgcacctgcacctg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28849033 |
gcacaacactcaaatgcacaagcttcagtcaacataaatgcacctgcacctg |
28848982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 1392708 - 1393003
Alignment:
| Q |
6 |
agaagcataggaggaaggataatgatgagcctaagtcaac---tagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaact |
102 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
1392708 |
agaagcttagaaggaaggataatgatgagcctaagtcaacaactagcaagaagggaaagagaaatcaggagactatgaggtgcacaagatgtaaagaact |
1392807 |
T |
|
| Q |
103 |
tggacataacatgatgacttgtaagggtaaaacagctgctg--ataggtcaattagacctggagggaacaaggtaataacacactttct-aggttataac |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
1392808 |
tggacataacatgaggacttgtaagggtaaaacagctgctgatataggtcaattagacctggagggaacaaggtaataacacagtttctgctgttataac |
1392907 |
T |
|
| Q |
200 |
actttctgatatataacacaacttctgatatataacacactttgtgatattgtaggataatactgatattcaacaccccgaggcttcaaatgcaca |
295 |
Q |
| |
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||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
1392908 |
actttctgatagataacacaggatctcatatttaacacactttgtgatattgtaggataatactgaacttcaacaccctgaggcttcaaatgcaca |
1393003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 48054984 - 48054675
Alignment:
| Q |
6 |
agaagcataggaggaaggataatgatgagcctaagtcaac---tagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaact |
102 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| |
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| T |
48054984 |
agaagcttagaaggaaggataatgatgagcctaagtcaacaactagcaagaagggaaagagaaatcaggacactgtgaggttcacaagatgtaaggaact |
48054885 |
T |
|
| Q |
103 |
tggacataacatgatgacttgtaagggtaaaacagctgctgataggtcaattagacctggagggaacaaggtaataacacactttct-aggttataacac |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||||| |
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|
| T |
48054884 |
tggacataacatgaggacttgtaagggtaaaacagctactgataggtcaattaaacctggagggaacaagttaataacacagtttctgttgttataacac |
48054785 |
T |
|
| Q |
202 |
tttctgatatataacacaacttctgatatataacacactttgtgatattgtaggataatactgatattcaacaccccgaggcttcaaatgcacaacactc |
301 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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|
| T |
48054784 |
tttctgatagataacacatgatctgatatataacacactttgtgatattgtaggataatactgatattcaacaccctgaggcttcaaatgcacaagcttc |
48054685 |
T |
|
| Q |
302 |
aaatgcacaa |
311 |
Q |
| |
|
|||||||||| |
|
|
| T |
48054684 |
aaatgcacaa |
48054675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 391 - 565
Target Start/End: Original strand, 26174666 - 26174838
Alignment:
| Q |
391 |
actttttctcttatgtatgtatgctggatgtcattaacaattgtaaaacgctgatgctcaaatttgtaaaatac--tagaatacatgtatttggtcacaa |
488 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||| ||||| | |||||||||| ||| | ||||| |
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|
| T |
26174666 |
actttttctcttatgtatgtatgctggctgtcattaacatttgtaaaatgccgatgctcaaatttgcaaaatgctatagaatacatttatctattcacag |
26174765 |
T |
|
| Q |
489 |
ctcacacatgtgatctcaattccctatttgctctgtagttatatagatagatattaggtggtcaagaaaaaacttat |
565 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||| ||| |||||||||||| ||||||||||||| |||| |
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|
| T |
26174766 |
ctcacacatgtgatctcagttccctatttgttctgta-ctat---gatagatattagagggtcaagaaaaaatttat |
26174838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 5026569 - 5026663
Alignment:
| Q |
17 |
aggaaggataatgatgagcctaagtcaactagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaacttggacataa |
111 |
Q |
| |
|
|||||||| |||||||| || || || |||||||||||||| ||| |||||||||| ||||||||||| | ||| | ||| || ||||||||||| |
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|
| T |
5026569 |
aggaaggagaatgatgaaccaaaatccactagcaagaagggcaagagaaatcaggaaactgtgaggtgtagaaggtgtaaagagcttggacataa |
5026663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 8064066 - 8063773
Alignment:
| Q |
6 |
agaagcataggaggaaggataatgatgagcctaagtcaac---tagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaact |
102 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
8064066 |
agaagcttagaaggaaggataatgatgagcctaagccaacaactagcaagaagggaaagagaaatcaggagactgtgaggtgcacaagatgtaaagaact |
8063967 |
T |
|
| Q |
103 |
tggacataacatgatgacttgtaagggtaaaacagctgctgataggtcaattagacctggagggaacaaggtaataacacactttct-aggttataacac |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
8063966 |
tggacataacatgaggacttgtaagggtaaaacagctgctgataggtcaattagacctggagggaacaaggtaataacacagtttctgctgttataacac |
8063867 |
T |
|
| Q |
202 |
tttctgatatataacacaacttctgatatataacacactttgtgatattgtaggataatactgatattcaacaccccgaggcttcaaatgcaca |
295 |
Q |
| |
|
||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
8063866 |
tttctgatagataacacaggatctcatatttaacacactttgtgatattgtaggataatactgaacttcaacaccctgaggcttcaaatgcaca |
8063773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 432 - 578
Target Start/End: Complemental strand, 26130954 - 26130810
Alignment:
| Q |
432 |
tgtaaaacgctgatgctcaaattt-gtaaaatactagaatacatgtatttggtcacaactcacacatgtgatctcaattccctatttgctctgtagttat |
530 |
Q |
| |
|
||||||| | |||||||||||||| | ||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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|
| T |
26130954 |
tgtaaaatgatgatgctcaaattttgcaaaatgctagaatacatttatctggtcacaactcacacatgtgatctcaactccctatttgctttgtacttat |
26130855 |
T |
|
| Q |
531 |
atagatagatattaggtggtcaagaaaaaacttataatggcatatgtg |
578 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26130854 |
---gatagattttaggtggtcaagaaaaaacttataatggaatatgtg |
26130810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 192 - 317
Target Start/End: Original strand, 48157369 - 48157494
Alignment:
| Q |
192 |
gttataacactttctgatatataacacaacttctgatatataacacactttgtgatattgtaggataatactgatattcaacaccccgaggcttcaaatg |
291 |
Q |
| |
|
||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||| | | |||||||||| || |||||||||| |
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|
| T |
48157369 |
gttataacactttctgatagctagctaaggttctgatatataacacactttgtgatattgtaggataatccaactcttcaacaccctgaagcttcaaatg |
48157468 |
T |
|
| Q |
292 |
cacaacactcaaatgcacaagcttca |
317 |
Q |
| |
|
||||| |||||||||| ||||||| |
|
|
| T |
48157469 |
cacaaacttcaaatgcaccagcttca |
48157494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 14872402 - 14872496
Alignment:
| Q |
17 |
aggaaggataatgatgagcctaagtcaactagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaacttggacataa |
111 |
Q |
| |
|
|||||||| |||||||| || || || |||||||||||||| ||| ||||||||| ||||||||||| ||||| | ||| || ||||||||||| |
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|
| T |
14872402 |
aggaaggagaatgatgaaccaaaatccactagcaagaagggcaagaaaaatcaggaaactgtgaggtgtacaaggtgtaaagagcttggacataa |
14872496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 32971983 - 32972077
Alignment:
| Q |
17 |
aggaaggataatgatgagcctaagtcaactagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaacttggacataa |
111 |
Q |
| |
|
|||||||| ||||||||||| || ||| | | ||| ||||| ||| |||||||||| ||||||||||||| ||| | ||| || ||||||||||| |
|
|
| T |
32971983 |
aggaaggagaatgatgagcccaaatcagcaaacaaaaagggcaagagaaatcaggaaactgtgaggtgcagaagttgtaaagagcttggacataa |
32972077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 27320070 - 27320164
Alignment:
| Q |
17 |
aggaaggataatgatgagcctaagtcaactagcaagaagggaaagggaaatcaggagactgtgaggtgcacaagatataaggaacttggacataa |
111 |
Q |
| |
|
|||||||| |||||||| || || || |||| ||||||||| ||| |||||||||| ||||||||||| | ||| | ||| || ||||||||||| |
|
|
| T |
27320070 |
aggaaggagaatgatgaaccaaaatccactaacaagaagggcaagagaaatcaggaaactgtgaggtgtagaaggtgtaaagagcttggacataa |
27320164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 7986024 - 7986097
Alignment:
| Q |
17 |
aggaaggataatgatgagcctaagtcaactagcaagaagggaaagggaaatcaggagactgtgaggtgcacaag |
90 |
Q |
| |
|
||||| || |||||||| || || ||||||||||||||||| ||| |||||||| | ||||||||||| ||||| |
|
|
| T |
7986024 |
aggaatgagaatgatgaacccaaatcaactagcaagaagggcaagagaaatcagaaaactgtgaggtgtacaag |
7986097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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