View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_20 (Length: 287)
Name: NF19218_low_20
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 6838632 - 6838899
Alignment:
| Q |
2 |
caagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaag |
101 |
Q |
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| T |
6838632 |
caagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaag |
6838731 |
T |
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| Q |
102 |
attattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttat |
201 |
Q |
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| T |
6838732 |
attattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttat |
6838831 |
T |
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| Q |
202 |
tttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaaaaag |
269 |
Q |
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| T |
6838832 |
tttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaaaaag |
6838899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8471860 - 8471593
Alignment:
| Q |
1 |
gcaagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaa |
100 |
Q |
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| T |
8471860 |
gcaagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttctacgagtaa |
8471761 |
T |
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| Q |
101 |
gattattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagttta |
200 |
Q |
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| T |
8471760 |
gattattgtgacaacacgcgacaaagaggtagcattaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgactgttggagttta |
8471661 |
T |
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| Q |
201 |
ttttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaaaaa |
268 |
Q |
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| T |
8471660 |
ttttccagtcttgcttttcctggcaaaaaattgagcgaatacccaaatcttgaatcaattggcaaaaa |
8471593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 5299028 - 5298766
Alignment:
| Q |
3 |
aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaaga |
102 |
Q |
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| T |
5299028 |
aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga |
5298929 |
T |
|
| Q |
103 |
ttattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttatt |
202 |
Q |
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| T |
5298928 |
ttattgtgaccacacgtgacaaggaggtagcatcagttatgaagtccaccaaacttcttcatttgaagcaattgaagaagagtgaatgttggagtatgtt |
5298829 |
T |
|
| Q |
203 |
ttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattggcaa |
265 |
Q |
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| | || ||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
5298828 |
tgtgagacacgcttttcacggcacaaatgcaagtgaatatccaaatcttgaatcaattggcaa |
5298766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 262
Target Start/End: Complemental strand, 5280919 - 5280719
Alignment:
| Q |
62 |
gttactacttccttttaaccaaggatcttctacgagtaagattattgtgacaacacgcgataaaaatgtagcatcaattgtgaaatctacaaagttattt |
161 |
Q |
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|||||||||||| ||||| || ||||||| | ||||||||||||||||| ||||| || ||| | |||||| || | ||||||| | | || || |
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| T |
5280919 |
gttactacttccctttaatcatggatcttttggaagtaagattattgtgaccacacgtgacaaagaggtagcagcagtaatgaaatcctcccaaatagtt |
5280820 |
T |
|
| Q |
162 |
gatttgaaacaattggagaagagtgacagttggagtttattttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaacttgaatcaattg |
261 |
Q |
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| T |
5280819 |
catttgaagcaattggaggaaagcgatggttggaatttatttgtgagacatgcttttcacggaaaaaatgcaagtgaatatccaaatcttgaatcaattg |
5280720 |
T |
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| Q |
262 |
g |
262 |
Q |
| |
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| T |
5280719 |
g |
5280719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 8568692 - 8568795
Alignment:
| Q |
15 |
cttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaagattattgtgacaa |
114 |
Q |
| |
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|||||| | |||||| ||||||| |||||||||| ||||||| |||||||||||| ||||| || |||||||| ||||||||||||||||||| |
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| T |
8568692 |
cttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatcatggatcttcaggaagtaagattattgtgacaa |
8568791 |
T |
|
| Q |
115 |
cacg |
118 |
Q |
| |
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|||| |
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| T |
8568792 |
cacg |
8568795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 8589977 - 8589761
Alignment:
| Q |
52 |
gttgggagacgttactacttccttttaaccaaggatcttctacgagtaagattattgtgacaacacgcgataaaaatgtagcat--caa-ttgtgaaatc |
148 |
Q |
| |
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|||||||| |||||||||||| |||||||| |||| |||| ||||||||| | ||||||||||| || || | ||||||| || || | ||||| |
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| T |
8589977 |
gttgggagcagttactacttccctttaaccatggattttctggaagtaagattgtcgtgacaacacgtgaaaaggaggtagcatatcatgttcttaaatc |
8589878 |
T |
|
| Q |
149 |
tacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttattttccacacttgcttttcacggcaaaaatgcaagcgaatacccaaaa |
248 |
Q |
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|| |||||||||||||| |||||||||| || || || |||||||||||||| |||| ||||||||| || || |||| | ||||| ||||| |
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| T |
8589877 |
caccaagttatttgatttacaacaattggacaaaagcgattgttggagtttatttgtgacacatgcttttcaaggaaagaatgtgtgtgaatatccaaat |
8589778 |
T |
|
| Q |
249 |
cttgaatcaattggcaa |
265 |
Q |
| |
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|||||||||| |||||| |
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| T |
8589777 |
cttgaatcaactggcaa |
8589761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 6448575 - 6448629
Alignment:
| Q |
64 |
tactacttccttttaaccaaggatcttctacgagtaagattattgtgacaacacg |
118 |
Q |
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|||| ||||| |||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
6448575 |
tactgcttccgtttaaccatggatcttctggaagtaagattattgtgacaacacg |
6448629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 6479764 - 6479829
Alignment:
| Q |
53 |
ttgggagacgttactacttccttttaaccaaggatcttctacgagtaagattattgtgacaacacg |
118 |
Q |
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| T |
6479764 |
ttgggagcagttactacttccatttaaccatggatcttttggaagtaagattatcgtgacaacacg |
6479829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 6519953 - 6520009
Alignment:
| Q |
62 |
gttactacttccttttaaccaaggatcttctacgagtaagattattgtgacaacacg |
118 |
Q |
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|||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
6519953 |
gttactacttccgcttaaccatggatcttctggaagtaagattatcgtgacaacacg |
6520009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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