View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_28 (Length: 237)
Name: NF19218_low_28
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 17185292 - 17185073
Alignment:
| Q |
18 |
cactcatgatgacgagaaaaagaagacatgcaatgatgattctgctgttggcaaacacaacaacttgaaactcctccaacccatccatgattccaccgtc |
117 |
Q |
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| T |
17185292 |
cactcatgatgacgagaaaaagaagacatgcaatgatgattctactgttggcaaacacaacaacttgaaactcctccaacccatccatgattccacagtc |
17185193 |
T |
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| Q |
118 |
tgtctccatttttcaccgtcttccccctcctgtggctgcgatcaaatcgctaacgaacaaaagcttggaggtcaagaaatcgatgctgttaatgatcagc |
217 |
Q |
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| T |
17185192 |
tgtctccatttcttactgtctaccccctcctgcggctgcgatcaaattgctacggaacaaaagcttgggggtcaagaaatcgatgctgttaatgatcagc |
17185093 |
T |
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| Q |
218 |
aatgggagatcaaaaagttt |
237 |
Q |
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| T |
17185092 |
aatgggagatcaaaaagttt |
17185073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 17195154 - 17195373
Alignment:
| Q |
18 |
cactcatgatgacgagaaaaagaagacatgcaatgatgattctgctgttggcaaacacaacaacttgaaactcctccaacccatccatgattccaccgtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17195154 |
cactcatgatgacgagaaaaagaagacatgcaatgatgattctactgttggcaaacacaacaacttgaaactcctccaacccatccatgattccaccgtc |
17195253 |
T |
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| Q |
118 |
tgtctccatttttcaccgtcttccccctcctgtggctgcgatcaaatcgctaacgaacaaaagcttggaggtcaagaaatcgatgctgttaatgatcagc |
217 |
Q |
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| T |
17195254 |
tgtctccatttcttactgtctaccccgtcctgcggctgcgatcaaattgctacggaacaaaagcttgggggtcaagaaatcaatgctgttaatgatcagc |
17195353 |
T |
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| Q |
218 |
aatgggagatcaaaaagttt |
237 |
Q |
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| T |
17195354 |
aatgggagatcaaaaagttt |
17195373 |
T |
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Back To:
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