View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_3 (Length: 550)
Name: NF19218_low_3
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 43344396 - 43343875
Alignment:
| Q |
18 |
gtaagtgtgttgtttgtttttaagtttgccattggaaaatccaaatccaaaaccaatccaaaacaacttccatctccaccgaaactaccgatcatcggta |
117 |
Q |
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| T |
43344396 |
gtaagtgtgttgtttgtttttaagtttgccattggaaaatctaaatccaaaaccaatccaaatcaacttccatctccaccgaaactaccgatcatcggta |
43344297 |
T |
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| Q |
118 |
atcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttgggacaaaaacaaaatcc |
217 |
Q |
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| T |
43344296 |
atcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttgggacaaaaacaaaatcc |
43344197 |
T |
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| Q |
218 |
aactctagtggtttcatcagcagatgtagccatggaaatcatgaaaaatcatgatcgagttttttcaaaccgacctcaacatatagctccaaaaatctta |
317 |
Q |
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| T |
43344196 |
aactctagtggtttcatcagcagatgtaaccatggaaatcatgaaaaatcacgatcgaattttttcaaaccgacctcaacatatagctccaaaaatctta |
43344097 |
T |
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| Q |
318 |
ttgtatggatgtgatgacgttggttttggactttatggagaaaattggaaacaaaaaagaaaattatgtgtttccgaacttttgaacatgaaaagtgtgc |
417 |
Q |
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| T |
43344096 |
ttgtatggatgtgatgacgttggttttggactttatggagaaaattggaaacaaaaaagaaaattatgtgtttccgaacttttgaacatgaaaagtgtgc |
43343997 |
T |
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| Q |
418 |
aatcatatcatttcgttagagaagaagaagttgacgaattggttaataagttacgcgaagctagcttgaatgatgaatgtgtgaatttaagtgagatgat |
517 |
Q |
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| T |
43343996 |
aatcatatcatttcgttagagaagaagaagttgacgaattggttaataagttacgcgaagctagcttgaatgatgaatgtgtgaatttaagtgagatgat |
43343897 |
T |
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| Q |
518 |
tatttcaacatcaaataatatt |
539 |
Q |
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| T |
43343896 |
tatttcaacatcaaataatatt |
43343875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 60 - 509
Target Start/End: Complemental strand, 43361274 - 43360831
Alignment:
| Q |
60 |
aaatccaaaaccaatccaaaacaacttccatctccaccgaaactaccgatcatcggtaatcttcatcagctaggcacacttccacaccgttctcttagag |
159 |
Q |
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| T |
43361274 |
aaatccaaaaccaatataaatcagcctccgtctccaccgaaacttccgatcatcggtaatcttcatcagctaggcacacttccataccgttctcttcgaa |
43361175 |
T |
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| Q |
160 |
acctttcactcaaatatggggacatgatgttgttgcagttgggacaaaaacaaaatccaactctagtggtttcatcagcagatgtagccatggaaatcat |
259 |
Q |
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| T |
43361174 |
acctatcacacaaatatggaaacataatgttattgcaattaggacaaagacaaa------ctttagtgatttcatcagcagatatagccatggaaatcat |
43361081 |
T |
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| Q |
260 |
gaaaaatcatgatcgagttttttcaaaccgacctcaacatatagctccaaaaatcttattgtatggatgtgatgacgttggttttggactttatggagaa |
359 |
Q |
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| T |
43361080 |
gaataaccatgatctagctttttcgaaccgagcccaaactatagcttcaaaaatcatattttatggaggaacggatgttggttttacacattatggagaa |
43360981 |
T |
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| Q |
360 |
aattggaaacaaaaaagaaaattatgtgtttccgaacttttgaacatgaaaagtgtgcaatcatatcatttcgttagagaagaagaagttgacgaattgg |
459 |
Q |
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| T |
43360980 |
aattggagacaaaaaagaaaaatatgtgtcctagaacttttgagcatgaaaagtgtacaatcatttcatcaaattagaaaagaagtagttgaggaattgg |
43360881 |
T |
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| Q |
460 |
ttaataagttacgcgaagctagcttgaatgatgaatgtgtgaatttaagt |
509 |
Q |
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| T |
43360880 |
tgagtaaactacgtgaagctagctcaaatgatgcatgtgtgaatttaagt |
43360831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 107 - 261
Target Start/End: Original strand, 43357198 - 43357352
Alignment:
| Q |
107 |
gatcatcggtaatcttcatcagctaggcacacttccacaccgttctcttagagacctttcactcaaatatggggacatgatgttgttgcagttgggacaa |
206 |
Q |
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|||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||| | ||| ||| ||||| ||||| || ||||||||||| |||||| |
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| T |
43357198 |
gatcattggtaatcttcatcctctaggcacactcccacattgttctcttcgagacgtatcaatcatatatgacgacataatattgttgcagtttggacaa |
43357297 |
T |
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| Q |
207 |
aaacaaaatccaactctagtggtttcatcagcagatgtagccatggaaatcatga |
261 |
Q |
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| T |
43357298 |
agacaaacaccaactctagtggtttcatcaacagatgtaataatggaaatcatga |
43357352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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