View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_30 (Length: 235)
Name: NF19218_low_30
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43210629 - 43210411
Alignment:
| Q |
1 |
ttcctataatcgtcatcctcttcttcttcttttctcaaagcacattaaagcactcctttaaaacctcatcacccaaccatggttcatgccaaaataatgt |
100 |
Q |
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| T |
43210629 |
ttcctataatcgtcgtcctcttcttctt---ttctcaaagcacattaaagcactcctttaaaacctcatcacccaaccatggttcatgccaaaataatgt |
43210533 |
T |
|
| Q |
101 |
ggtactactactctctaccgttttagtaacgttaacaactaaccatctccctccactctcctcattacctcggacaatacnnnnnnntatttctccaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43210532 |
ggtactactactctctaccgttttagtaacgttaccaacaaaccatctccctccactctcctcattacctcggacaatacaaaaaaatatttctccaaca |
43210433 |
T |
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| Q |
201 |
aatcgtatttttaaccccaact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43210432 |
aatcgtatttttaaccccaact |
43210411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 21462469 - 21462425
Alignment:
| Q |
121 |
ttttagtaacgttaacaactaaccatctccctccactctcctcat |
165 |
Q |
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|||||||||| ||| | || ||||||||||||||||||||||||| |
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| T |
21462469 |
ttttagtaacattatccacaaaccatctccctccactctcctcat |
21462425 |
T |
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