View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_4 (Length: 547)
Name: NF19218_low_4
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 37 - 547
Target Start/End: Complemental strand, 1837139 - 1836629
Alignment:
| Q |
37 |
tgttggctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgcttagaggacgaggaagagtgtttgcaagttccgggaa |
136 |
Q |
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| T |
1837139 |
tgttggctctcaacctcaaggcggcttcatgtgctgccattcgaatgtggtcagcattgttgcttagaggacgaggaagagtgtttgcaagttccgggaa |
1837040 |
T |
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| Q |
137 |
attgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctctggtgtctcgaaacttcctaaccagattcttgtt |
236 |
Q |
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| T |
1837039 |
attgagcctggcttcacgtcccctgaaatgcaaggcagctacgtcgtatgcagccgctgccatctctggtgtctcgaaacttcctaaccagattcttgtt |
1836940 |
T |
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| Q |
237 |
ttggtgccgggctcacgaatttcggaaacccatttaccccattttctcttacggactcctctgtatgcagaactagcagcaccacttgaagacattgttc |
336 |
Q |
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| T |
1836939 |
ttggtgccgggctcgcgaatttcggaaacccatttaccccattttctcttacggactcctctgtatgcagaactagcagcaccacttgaagacattgttc |
1836840 |
T |
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| Q |
337 |
atgcaaattaagtatagtttttatcgaaatataattatgtccatgttagttggtacttgatattgatactttctagtgagaaattttgtctatgccatag |
436 |
Q |
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| T |
1836839 |
atgcaaattaagtatagtttttatcgaaatatatttatgtcaatgttagttggtacttgatattgttactttctagtgagaaattttgtctatgccatag |
1836740 |
T |
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| Q |
437 |
aaaggtatttatagatattgtgattgtgcgtacctagctttcaggtgaaactctttggaagtgagtttcctcgtaggtgcacaaaatttgtgtttgtctc |
536 |
Q |
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| T |
1836739 |
aaaggtatttatagatattgtgattgtgcgtacctagctttcaggtgaaactctttggaagtgagtttcctcgtaggtgcacaaaatttgtgtttgtatg |
1836640 |
T |
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| Q |
537 |
tgctcctacac |
547 |
Q |
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| T |
1836639 |
tgctgctacac |
1836629 |
T |
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