View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19218_low_5 (Length: 546)
Name: NF19218_low_5
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 7339916 - 7340405
Alignment:
| Q |
1 |
cgaaccatcatactttaaacatgttgaaggtaggatgaaccataagaagttgaagtgtgtgaattttaataacataagataagata-----gaatgagct |
95 |
Q |
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| T |
7339916 |
cgaactatcatactttaaacatgttgaaggcaggatgaaccataagaagttgaagtgcgtgaattttagtaacataagataagataagatagaatgagct |
7340015 |
T |
|
| Q |
96 |
aaagtgtaattnnnnnnnnnctcttttaggaggggaatataatttaactttttc-aacacaaaataatttgcatatagcctacataatacatatatagac |
194 |
Q |
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| T |
7340016 |
aaagtgtaattaaaaaaaaactcttttaggaggggaatataatttaactttttctaacacaaaataatttgcatatagcctacataatacatatatagac |
7340115 |
T |
|
| Q |
195 |
aagctaatcacctatatgtagtattttagtttgacgcgttaactagaaaattatatccatcatacaaacttttaagttattcataaaagctaacatacgt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7340116 |
aagctaatcacctatatgtagtattttagtttgacgcgttaactagaaaattatatccatcatacaagcttttaagttattcataaaagctaacatacgt |
7340215 |
T |
|
| Q |
295 |
atgaattcattcttttctttcttgaggaaaaaagtccaagaaaatatatccaattcatcacctataaaaagtacatcaattggacacatttaactctaac |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340216 |
atgaattcattcttttctttcttgaggaaaaaagtccaagaaaatatatccaattcatcacctataaaaagtacatcaattggacacatttaactctaac |
7340315 |
T |
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| Q |
395 |
acactagctagctactatnnnnnnnnctactacgtgtatacatttacctaacctttcttccacttttgaaaaatcttttcttctcttgag |
484 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340316 |
acactagctagctactataaaaaaaactactacgtgtatacatttacctaacctttcttccacttttgaaaaatcttttcttctcttgag |
7340405 |
T |
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