View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19218_low_8 (Length: 442)
Name: NF19218_low_8
Description: NF19218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19218_low_8 |
 | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold2116 (1 HSPs) |
| | |
|
| [»] scaffold1268 (1 HSPs) |
| | |
|
| [»] scaffold1267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold2086 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 223 - 1
Alignment:
| Q |
1 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
124 |
T |
|
| Q |
101 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
24 |
T |
|
| Q |
201 |
cagatttccataaactcgaacca |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
23 |
cagatttccatagactcgaacca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 223 - 1
Alignment:
| Q |
1 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
124 |
T |
|
| Q |
101 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
24 |
T |
|
| Q |
201 |
cagatttccataaactcgaacca |
223 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
23 |
cagatttccatagactcgaacca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 5 - 429
Target Start/End: Original strand, 35754612 - 35755036
Alignment:
| Q |
5 |
tcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaattctt |
104 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35754612 |
tcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaattctt |
35754711 |
T |
|
| Q |
105 |
tcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcaga |
204 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||| || |||||||| ||||| |
|
|
| T |
35754712 |
tcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcact |
35754811 |
T |
|
| Q |
205 |
tttccataaactcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggttt |
304 |
Q |
| |
|
|||||||||||| |||||| ||||| |||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35754812 |
tttccataaacttgaaccatttgccttaaaaccatgttcctttttaggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggttt |
35754911 |
T |
|
| Q |
305 |
ttggccctaagggtgtcaagtgcttcaccttccaattcatcaaaagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttgga |
404 |
Q |
| |
|
|||| | |||| || ||| ||||| |||| ||||| ||||| |||||||||||||| |||||||||| | ||| ||||||| |||||||| || |
|
|
| T |
35754912 |
ttggtcttaagtgtagcaatgacttcatcttctaattcttcaaatgtgttgattataattgttgatgatctcaaacagttttgtgactcagaacccatga |
35755011 |
T |
|
| Q |
405 |
aattaaacattacatcatttagatc |
429 |
Q |
| |
|
||| |||||| | |||||||||||| |
|
|
| T |
35755012 |
aatcaaacataatatcatttagatc |
35755036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 35848512 - 35848865
Alignment:
| Q |
1 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
100 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
35848512 |
aaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggtaatttgctatttgctattccccaagcaaat |
35848611 |
T |
|
| Q |
101 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
200 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||| ||||||| |||||| ||||||| ||||||||||| | |||||||| |||||||||| | || |
|
|
| T |
35848612 |
tctttcaagtgatgatctgtcataacagttatacttccgtaattaatatatagtactgagccaggttcccatttactcaaccattttatgcattcagagt |
35848711 |
T |
|
| Q |
201 |
cagatttccataaactcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagg |
300 |
Q |
| |
|
|| |||||| ||||| ||||||||||| | ||| || | ||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
35848712 |
catttttccaaaaacttgaaccacttgctgcaaaaccgttttctttctcaggaaaatgcctaccaagcatgtgaagtgggccaatgctatatatgttagg |
35848811 |
T |
|
| Q |
301 |
gtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaaaagtgtt |
354 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |
|
|
| T |
35848812 |
gtttttggccctaagggtgtccagggcttcaccttctaattcttcaaatgtgtt |
35848865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 35866183 - 35866536
Alignment:
| Q |
1 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
100 |
Q |
| |
|
||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
35866183 |
aaactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggtaatttgctatttgctattccccaagcaaat |
35866282 |
T |
|
| Q |
101 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
200 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||| ||||||| |||||| ||||||| ||||||||||| | |||||||| |||||||||| | || |
|
|
| T |
35866283 |
tctttcaagtgatgatctgtcataacagttatacttccgtaattaatatatagtactgagccaggttcccatttactcaaccattttatgcattcagagt |
35866382 |
T |
|
| Q |
201 |
cagatttccataaactcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagg |
300 |
Q |
| |
|
|| |||||| ||||| ||||||||||| | ||| || | ||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
35866383 |
catttttccaaaaacttgaaccacttgctgcaaaaccgttttctttctcaggaaaatgcctaccaagcatgtgaagtgggccaatgctatatatgttagg |
35866482 |
T |
|
| Q |
301 |
gtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaaaagtgtt |
354 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |
|
|
| T |
35866483 |
gtttttggccctaagggtgtccagggcttcaccttctaattcttcaaatgtgtt |
35866536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 35774735 - 35775072
Alignment:
| Q |
5 |
tcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaattctt |
104 |
Q |
| |
|
||||||||||||| |||||| || |||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
35774735 |
tcttgtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatccataaaaaaggtaatttactatttgctattccccaagcaaattctt |
35774834 |
T |
|
| Q |
105 |
tcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcaga |
204 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| | |||||||| |||| ||||| |||||||| |
|
|
| T |
35774835 |
tcaagtgatgatttgtcataacagttatacttccataattaatatatagtactgagcaaggttcccatttactcaaccattttatacattccgggtcaga |
35774934 |
T |
|
| Q |
205 |
tttccataaactcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggttt |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||| ||||||||||| || |||||||||||||||| || |||||| ||||||||| || || |
|
|
| T |
35774935 |
tttccataaactcgaaccacttgctttaaaaccattttctttctcaggaaaatgtctaccaagcatgtgaatcgggccaatgctatatatgtttggattg |
35775034 |
T |
|
| Q |
305 |
ttggccctaagggtgtcaagtgcttcaccttccaattc |
342 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
35775035 |
ttggccctaagggtgtcaagggtttcaccttccaattc |
35775072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 35735808 - 35735939
Alignment:
| Q |
43 |
atctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaattctttcaagtggtgatcagtcataacagttacacttccataa |
142 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| || || || | ||| |||| |||| || |||||||||| |
|
|
| T |
35735808 |
atctggtctatttatccataaaaatggtaatttactatttgctaaaccccaagcaaattcattaaaatgtttctcactcatcacagctatacttccataa |
35735907 |
T |
|
| Q |
143 |
ttaacatataggactgagcaaggttcccattg |
174 |
Q |
| |
|
|||| ||||| ||||| | |||||||||||| |
|
|
| T |
35735908 |
ttaatatatatcactgaactaggttcccattg |
35735939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 3360 - 2972
Alignment:
| Q |
1 |
aaactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3360 |
aaactcttgtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatccataaaaaaggtaatttactatttgctattccccaagcaaat |
3261 |
T |
|
| Q |
101 |
tctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggt |
200 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| | |||||||| |||| ||||| |||| |
|
|
| T |
3260 |
tctttcaagtgatgatttgtcataacagttatacttccataattaatatatagtactgagcaaggttcccatttactcaaccattttatacattccgggt |
3161 |
T |
|
| Q |
201 |
cagatttccataaactcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || | ||| ||||||||||| || |||||||||||||||| || |||||| ||||||||| || |
|
|
| T |
3160 |
cagatttccataaactcgaaccacttgctttaaaacctttttctttctcaggaaaatgtctaccaagcatgtgaatcgggccaatgctatatatgtttgg |
3061 |
T |
|
| Q |
301 |
gtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaaaagtgttgattataatcattgatgatcttatacaattttgtg |
389 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||||||||||| || || ||||| || || || | |||||||| | ||||||||||| |
|
|
| T |
3060 |
attgttggccctaagggtgtcaagggtttcaccttccaattcttcgaacgtgttaatgattattgtcgatgatctcaaacaattttgtg |
2972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2116 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 248 - 433
Target Start/End: Complemental strand, 1067 - 882
Alignment:
| Q |
248 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1067 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
968 |
T |
|
| Q |
348 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
967 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 248 - 433
Target Start/End: Complemental strand, 2233 - 2048
Alignment:
| Q |
248 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2233 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaa |
2134 |
T |
|
| Q |
348 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
433 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133 |
atgtgttgattataatcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
2048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 248 - 433
Target Start/End: Complemental strand, 2233 - 2048
Alignment:
| Q |
248 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2233 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaa |
2134 |
T |
|
| Q |
348 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
433 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133 |
atgtgttgattataatcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
2048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University