View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19219_high_1 (Length: 659)
Name: NF19219_high_1
Description: NF19219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19219_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 48 - 651
Target Start/End: Complemental strand, 13923751 - 13923148
Alignment:
| Q |
48 |
gacgctgcaagcgtgcaatcaactttgtcaagcaaaatcaatgaaagttagctgaaatagcactcagctagaaacaagcaattacattttcaaaacatca |
147 |
Q |
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| T |
13923751 |
gacgctgcaagcgtgcaatcaactttgtcaagcaaaatcaatgaaagttagctgaaatagcactcagctagaatcaagcaattacattttcaaaacatca |
13923652 |
T |
|
| Q |
148 |
aataagcaaatagttatgaagtatagatactaacacagacacgacactgacaaatcgacataggtaataatttgagaaatatattatgtgtcagtgctat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923651 |
aataagcaaatagttatgaagtatagatactaacacagacacgacactgacaaatcgacataggtaataatttgagaaatatattatgtgtcagtgctat |
13923552 |
T |
|
| Q |
248 |
atagattcgattagattcaagatgaattcaaaaagatcatgatgtatttacttacctcttgtgcttccttggtggttgcttcccagacttctttgtggtt |
347 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13923551 |
atagattcgattagattcaagatggattcaaaaagatcatgatgtatttacttacctcttgtgcttccttggtggttgcttctcagacttctttgtggtt |
13923452 |
T |
|
| Q |
348 |
ggatccgcacgaatggcagcacgcaccttttttgtatcgttcctcaatcccaccagcctctatcccatgcttgatacattcactgaagtgtgactggtat |
447 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
13923451 |
ggatccgcacgaatggaagcacgcaccttttttgtatcgttcctcaatcccactagcctctatcccatgcttgatatattcactgaagtgcgactggtat |
13923352 |
T |
|
| Q |
448 |
ttatctggttcatcttccatcaacacctacaatgaataccgtaaagtataaaggttgtaaccaaaatttctagatacctttataatgaatgcacaaaaaa |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
13923351 |
ttatctggttcatcttccatcaacacctacaatgaataccataaagtataaaggttgtaaccaaaatttctagatacctttataaagaatgcactaaaaa |
13923252 |
T |
|
| Q |
548 |
taaggagaacaaagtacaattttcccacttgccttcatatagtaagcaacatgtccaccgaagatatttttacggcgagcctcaacatcaagctttttct |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13923251 |
taaggagaacaaagtacaattttcccacttgccttcatatagtaagcaacatgtccaccgaagatatttttacggcgagcctcagcatcaagctttttct |
13923152 |
T |
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| Q |
648 |
tctc |
651 |
Q |
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|||| |
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| T |
13923151 |
tctc |
13923148 |
T |
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